Hb_007552_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig7552: 54574-57084
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP26031.1
description hypothetical protein JCGZ_21064 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57020: 54603-54743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007552_030 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
2 Hb_009323_010 0.0033412659 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
3 Hb_004126_020 0.0048168219 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
4 Hb_001268_270 0.0084033692 - - protein binding protein, putative [Ricinus communis]
5 Hb_000691_040 0.0088543376 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
6 Hb_046615_050 0.0098057251 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
7 Hb_012143_010 0.0131556618 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
8 Hb_004645_060 0.0147542019 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
9 Hb_001132_020 0.0160718292 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_000381_060 0.0188987468 - - -
11 Hb_001019_110 0.0193317175 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
12 Hb_002259_100 0.0196719776 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
13 Hb_000221_010 0.0222846442 - - polyprotein [Oryza australiensis]
14 Hb_002817_020 0.0264868283 - - -
15 Hb_001817_200 0.0266800523 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
16 Hb_002391_280 0.0268561868 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
17 Hb_000008_100 0.027937622 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
18 Hb_002391_260 0.0285588753 - - hypothetical protein RCOM_0017280 [Ricinus communis]
19 Hb_001571_070 0.0293948468 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
20 Hb_000334_100 0.0315098019 - - hypothetical protein JCGZ_16788 [Jatropha curcas]

Gene co-expression network

sample Hb_007552_030 Hb_007552_030 Hb_009323_010 Hb_009323_010 Hb_007552_030--Hb_009323_010 Hb_004126_020 Hb_004126_020 Hb_007552_030--Hb_004126_020 Hb_001268_270 Hb_001268_270 Hb_007552_030--Hb_001268_270 Hb_000691_040 Hb_000691_040 Hb_007552_030--Hb_000691_040 Hb_046615_050 Hb_046615_050 Hb_007552_030--Hb_046615_050 Hb_012143_010 Hb_012143_010 Hb_007552_030--Hb_012143_010 Hb_009323_010--Hb_004126_020 Hb_004645_060 Hb_004645_060 Hb_009323_010--Hb_004645_060 Hb_009323_010--Hb_001268_270 Hb_009323_010--Hb_000691_040 Hb_009323_010--Hb_046615_050 Hb_004126_020--Hb_001268_270 Hb_004126_020--Hb_000691_040 Hb_004126_020--Hb_046615_050 Hb_004126_020--Hb_012143_010 Hb_001268_270--Hb_000691_040 Hb_001268_270--Hb_046615_050 Hb_001268_270--Hb_012143_010 Hb_001132_020 Hb_001132_020 Hb_001268_270--Hb_001132_020 Hb_000691_040--Hb_046615_050 Hb_000691_040--Hb_012143_010 Hb_000691_040--Hb_001132_020 Hb_046615_050--Hb_012143_010 Hb_046615_050--Hb_001132_020 Hb_000381_060 Hb_000381_060 Hb_046615_050--Hb_000381_060 Hb_012143_010--Hb_001132_020 Hb_012143_010--Hb_000381_060 Hb_001019_110 Hb_001019_110 Hb_012143_010--Hb_001019_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.145399 0.0521498 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis