Hb_001268_270

Information

Type -
Description -
Location Contig1268: 266597-268777
Sequence    

Annotation

kegg
ID rcu:RCOM_0830440
description protein binding protein, putative
nr
ID XP_002520647.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9FGH9
description Exocyst complex component EXO70B1 OS=Arabidopsis thaliana GN=EXO70B1 PE=1 SV=1
trembl
ID B9S3S8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0830440 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_270 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000691_040 0.0004509872 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
3 Hb_046615_050 0.0014024205 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
4 Hb_004126_020 0.003586628 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
5 Hb_012143_010 0.0047525878 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
6 Hb_001132_020 0.0076690445 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_007552_030 0.0084033692 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
8 Hb_000381_060 0.010496322 - - -
9 Hb_001019_110 0.0109293548 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
10 Hb_009323_010 0.011744454 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
11 Hb_000221_010 0.0138827549 - - polyprotein [Oryza australiensis]
12 Hb_002817_020 0.0180857646 - - -
13 Hb_002391_280 0.0184552042 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
14 Hb_000008_100 0.0195368851 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
15 Hb_000334_100 0.0231099627 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
16 Hb_004645_060 0.0231560192 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
17 Hb_000489_050 0.0266192809 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
18 Hb_002259_100 0.0280728549 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
19 Hb_003667_030 0.0287099534 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
20 Hb_156853_010 0.0297633833 - - PREDICTED: vinorine synthase-like [Populus euphratica]

Gene co-expression network

sample Hb_001268_270 Hb_001268_270 Hb_000691_040 Hb_000691_040 Hb_001268_270--Hb_000691_040 Hb_046615_050 Hb_046615_050 Hb_001268_270--Hb_046615_050 Hb_004126_020 Hb_004126_020 Hb_001268_270--Hb_004126_020 Hb_012143_010 Hb_012143_010 Hb_001268_270--Hb_012143_010 Hb_001132_020 Hb_001132_020 Hb_001268_270--Hb_001132_020 Hb_007552_030 Hb_007552_030 Hb_001268_270--Hb_007552_030 Hb_000691_040--Hb_046615_050 Hb_000691_040--Hb_004126_020 Hb_000691_040--Hb_012143_010 Hb_000691_040--Hb_001132_020 Hb_000691_040--Hb_007552_030 Hb_046615_050--Hb_012143_010 Hb_046615_050--Hb_004126_020 Hb_046615_050--Hb_001132_020 Hb_000381_060 Hb_000381_060 Hb_046615_050--Hb_000381_060 Hb_004126_020--Hb_007552_030 Hb_009323_010 Hb_009323_010 Hb_004126_020--Hb_009323_010 Hb_004126_020--Hb_012143_010 Hb_012143_010--Hb_001132_020 Hb_012143_010--Hb_000381_060 Hb_001019_110 Hb_001019_110 Hb_012143_010--Hb_001019_110 Hb_001132_020--Hb_000381_060 Hb_001132_020--Hb_001019_110 Hb_000221_010 Hb_000221_010 Hb_001132_020--Hb_000221_010 Hb_007552_030--Hb_009323_010 Hb_007552_030--Hb_046615_050 Hb_007552_030--Hb_012143_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0200878 0.00688686 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis