Hb_006452_210

Information

Type -
Description -
Location Contig6452: 206737-208419
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08870g
description POPTRDRAFT_557541; hypothetical protein
nr
ID XP_012073424.1
description PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
swissprot
ID P0C897
description Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1
trembl
ID B9HN24
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08870g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_210 0.0 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
2 Hb_001948_060 0.0468671827 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
3 Hb_020479_010 0.0468680243 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
4 Hb_187418_010 0.0469657817 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
5 Hb_003266_110 0.046987216 - - ATP binding protein, putative [Ricinus communis]
6 Hb_137288_010 0.0470636461 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
7 Hb_000003_800 0.0471607628 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001322_060 0.0471627327 - - unnamed protein product [Vitis vinifera]
9 Hb_001504_200 0.0475001185 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
10 Hb_004712_120 0.0479349952 - - Pectinesterase U1 precursor, putative [Ricinus communis]
11 Hb_003549_110 0.0479757135 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
12 Hb_000413_090 0.0482965387 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
13 Hb_001571_070 0.0491615105 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
14 Hb_002391_260 0.0494203307 - - hypothetical protein RCOM_0017280 [Ricinus communis]
15 Hb_001817_200 0.0500479992 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
16 Hb_001728_090 0.050273672 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
17 Hb_002986_150 0.0511852523 - - hypothetical protein glysoja_022060 [Glycine soja]
18 Hb_002259_100 0.052913048 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
19 Hb_004645_060 0.0553646649 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
20 Hb_004994_270 0.0556070175 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_210 Hb_006452_210 Hb_001948_060 Hb_001948_060 Hb_006452_210--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_006452_210--Hb_020479_010 Hb_187418_010 Hb_187418_010 Hb_006452_210--Hb_187418_010 Hb_003266_110 Hb_003266_110 Hb_006452_210--Hb_003266_110 Hb_137288_010 Hb_137288_010 Hb_006452_210--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_006452_210--Hb_000003_800 Hb_001948_060--Hb_020479_010 Hb_001948_060--Hb_003266_110 Hb_001948_060--Hb_187418_010 Hb_001948_060--Hb_137288_010 Hb_001948_060--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_001948_060--Hb_001322_060 Hb_020479_010--Hb_187418_010 Hb_020479_010--Hb_003266_110 Hb_020479_010--Hb_137288_010 Hb_020479_010--Hb_000003_800 Hb_020479_010--Hb_001322_060 Hb_001504_200 Hb_001504_200 Hb_187418_010--Hb_001504_200 Hb_187418_010--Hb_003266_110 Hb_004712_120 Hb_004712_120 Hb_187418_010--Hb_004712_120 Hb_003549_110 Hb_003549_110 Hb_187418_010--Hb_003549_110 Hb_003266_110--Hb_137288_010 Hb_003266_110--Hb_000003_800 Hb_003266_110--Hb_001322_060 Hb_137288_010--Hb_000003_800 Hb_137288_010--Hb_001322_060 Hb_000413_090 Hb_000413_090 Hb_137288_010--Hb_000413_090 Hb_000003_800--Hb_001322_060 Hb_000003_800--Hb_000413_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.34293 0.606552 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00858696 0

CAGE analysis