Hb_000621_100

Information

Type -
Description -
Location Contig621: 113320-113808
Sequence    

Annotation

kegg
ID rcu:RCOM_1571530
description hypothetical protein
nr
ID XP_002521231.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5G2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1571530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000621_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006120_140 0.0465388695 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
3 Hb_000000_040 0.0794809762 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
4 Hb_000025_770 0.0833301994 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
5 Hb_000321_040 0.0856163439 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
6 Hb_061361_010 0.0858631215 - - kinase, putative [Ricinus communis]
7 Hb_005066_050 0.0887405243 - - -
8 Hb_020273_020 0.1032710236 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_036182_010 0.1068987542 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
10 Hb_010369_020 0.112220031 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
11 Hb_001890_040 0.1174240834 - - receptor-kinase, putative [Ricinus communis]
12 Hb_001769_150 0.1227275167 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
13 Hb_000163_020 0.1336107768 - - -
14 Hb_028013_030 0.1336535668 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_023386_070 0.1358628769 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
16 Hb_000358_010 0.1444213362 - - PREDICTED: basic blue protein [Populus euphratica]
17 Hb_001205_280 0.1447695733 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
18 Hb_000227_020 0.1478207702 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
19 Hb_001076_010 0.1480261249 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
20 Hb_004631_040 0.1517791128 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_000621_100 Hb_000621_100 Hb_006120_140 Hb_006120_140 Hb_000621_100--Hb_006120_140 Hb_000000_040 Hb_000000_040 Hb_000621_100--Hb_000000_040 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_000321_040 Hb_000321_040 Hb_000621_100--Hb_000321_040 Hb_061361_010 Hb_061361_010 Hb_000621_100--Hb_061361_010 Hb_005066_050 Hb_005066_050 Hb_000621_100--Hb_005066_050 Hb_006120_140--Hb_000000_040 Hb_020273_020 Hb_020273_020 Hb_006120_140--Hb_020273_020 Hb_006120_140--Hb_000321_040 Hb_001890_040 Hb_001890_040 Hb_006120_140--Hb_001890_040 Hb_006120_140--Hb_005066_050 Hb_000000_040--Hb_020273_020 Hb_000000_040--Hb_005066_050 Hb_000000_040--Hb_000321_040 Hb_008725_110 Hb_008725_110 Hb_000000_040--Hb_008725_110 Hb_000025_770--Hb_061361_010 Hb_000025_770--Hb_005066_050 Hb_001205_280 Hb_001205_280 Hb_000025_770--Hb_001205_280 Hb_023386_070 Hb_023386_070 Hb_000025_770--Hb_023386_070 Hb_074674_010 Hb_074674_010 Hb_000025_770--Hb_074674_010 Hb_000321_040--Hb_020273_020 Hb_000321_040--Hb_001890_040 Hb_028013_030 Hb_028013_030 Hb_000321_040--Hb_028013_030 Hb_061361_010--Hb_005066_050 Hb_061361_010--Hb_001205_280 Hb_061361_010--Hb_023386_070 Hb_061361_010--Hb_074674_010 Hb_005066_050--Hb_008725_110 Hb_005066_050--Hb_001205_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.461033 0.138354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0911419 0

CAGE analysis