Hb_028013_030

Information

Type -
Description -
Location Contig28013: 54276-58619
Sequence    

Annotation

kegg
ID rcu:RCOM_0605720
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002529807.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID B9SUY8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0605720 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028013_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001890_040 0.0249514298 - - receptor-kinase, putative [Ricinus communis]
3 Hb_006120_140 0.1031907336 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
4 Hb_020273_020 0.1085486475 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000321_040 0.1090122071 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
6 Hb_000175_210 0.1259271445 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_000621_100 0.1336535668 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003549_010 0.1354854676 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
9 Hb_002805_260 0.135727228 - - conserved hypothetical protein [Ricinus communis]
10 Hb_036182_010 0.1366576772 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
11 Hb_000000_040 0.1401969297 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
12 Hb_027028_010 0.1420434722 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
13 Hb_001769_150 0.1451288493 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
14 Hb_173764_010 0.1577806916 - - protein binding protein, putative [Ricinus communis]
15 Hb_000552_030 0.1617090309 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
16 Hb_003119_120 0.1710978052 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
17 Hb_000679_280 0.1716506286 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
18 Hb_001476_030 0.1812119675 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
19 Hb_007951_080 0.1835737673 - - lactoylglutathione lyase, putative [Ricinus communis]
20 Hb_002498_290 0.1874500235 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]

Gene co-expression network

sample Hb_028013_030 Hb_028013_030 Hb_001890_040 Hb_001890_040 Hb_028013_030--Hb_001890_040 Hb_006120_140 Hb_006120_140 Hb_028013_030--Hb_006120_140 Hb_020273_020 Hb_020273_020 Hb_028013_030--Hb_020273_020 Hb_000321_040 Hb_000321_040 Hb_028013_030--Hb_000321_040 Hb_000175_210 Hb_000175_210 Hb_028013_030--Hb_000175_210 Hb_000621_100 Hb_000621_100 Hb_028013_030--Hb_000621_100 Hb_001890_040--Hb_006120_140 Hb_001890_040--Hb_020273_020 Hb_001890_040--Hb_000321_040 Hb_001890_040--Hb_000175_210 Hb_000000_040 Hb_000000_040 Hb_001890_040--Hb_000000_040 Hb_006120_140--Hb_000621_100 Hb_006120_140--Hb_000000_040 Hb_006120_140--Hb_020273_020 Hb_006120_140--Hb_000321_040 Hb_005066_050 Hb_005066_050 Hb_006120_140--Hb_005066_050 Hb_020273_020--Hb_000000_040 Hb_020273_020--Hb_000175_210 Hb_020273_020--Hb_000321_040 Hb_020273_020--Hb_000621_100 Hb_000321_040--Hb_000000_040 Hb_000321_040--Hb_000621_100 Hb_000175_210--Hb_000000_040 Hb_124302_010 Hb_124302_010 Hb_000175_210--Hb_124302_010 Hb_000175_210--Hb_006120_140 Hb_000621_100--Hb_000000_040 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_061361_010 Hb_061361_010 Hb_000621_100--Hb_061361_010 Hb_000621_100--Hb_005066_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0351757 0.0053955 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.010932 0

CAGE analysis