Hb_124302_010

Information

Type -
Description -
Location Contig124302: 10241-12090
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23440g
description POPTRDRAFT_822587; Serine carboxypeptidase precursor family protein
nr
ID XP_012080969.1
description PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
swissprot
ID P32826
description Serine carboxypeptidase-like 49 OS=Arabidopsis thaliana GN=SCPL49 PE=2 SV=2
trembl
ID A0A067K2X3
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_16161 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124302_010 0.0 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
2 Hb_032223_010 0.0943968544 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_010672_040 0.1112097801 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
4 Hb_008725_110 0.1210828468 - - PREDICTED: leucine-rich repeat extensin-like protein 1 [Jatropha curcas]
5 Hb_003147_020 0.1250027875 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
6 Hb_000175_210 0.1250188972 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_000984_230 0.1433455577 - - -
8 Hb_001102_030 0.1460568134 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_001546_100 0.1508359177 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
10 Hb_002030_140 0.1508759103 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
11 Hb_022929_010 0.1509207169 - - zinc/iron transporter, putative [Ricinus communis]
12 Hb_000680_080 0.150939024 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
13 Hb_012573_060 0.151141063 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
14 Hb_020273_020 0.1533681421 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_004019_130 0.15495591 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
16 Hb_014109_030 0.1555706699 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
17 Hb_000077_430 0.1556582411 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
18 Hb_000844_120 0.1562459462 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
19 Hb_000129_060 0.1563497333 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
20 Hb_003994_210 0.1563968618 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_124302_010 Hb_124302_010 Hb_032223_010 Hb_032223_010 Hb_124302_010--Hb_032223_010 Hb_010672_040 Hb_010672_040 Hb_124302_010--Hb_010672_040 Hb_008725_110 Hb_008725_110 Hb_124302_010--Hb_008725_110 Hb_003147_020 Hb_003147_020 Hb_124302_010--Hb_003147_020 Hb_000175_210 Hb_000175_210 Hb_124302_010--Hb_000175_210 Hb_000984_230 Hb_000984_230 Hb_124302_010--Hb_000984_230 Hb_012573_060 Hb_012573_060 Hb_032223_010--Hb_012573_060 Hb_000680_080 Hb_000680_080 Hb_032223_010--Hb_000680_080 Hb_022929_010 Hb_022929_010 Hb_032223_010--Hb_022929_010 Hb_002030_140 Hb_002030_140 Hb_032223_010--Hb_002030_140 Hb_014109_030 Hb_014109_030 Hb_032223_010--Hb_014109_030 Hb_001546_100 Hb_001546_100 Hb_032223_010--Hb_001546_100 Hb_010672_040--Hb_003147_020 Hb_002534_040 Hb_002534_040 Hb_010672_040--Hb_002534_040 Hb_010672_040--Hb_032223_010 Hb_000165_270 Hb_000165_270 Hb_010672_040--Hb_000165_270 Hb_001433_120 Hb_001433_120 Hb_010672_040--Hb_001433_120 Hb_000000_040 Hb_000000_040 Hb_008725_110--Hb_000000_040 Hb_005066_050 Hb_005066_050 Hb_008725_110--Hb_005066_050 Hb_001235_040 Hb_001235_040 Hb_008725_110--Hb_001235_040 Hb_020273_020 Hb_020273_020 Hb_008725_110--Hb_020273_020 Hb_000084_230 Hb_000084_230 Hb_008725_110--Hb_000084_230 Hb_003411_080 Hb_003411_080 Hb_003147_020--Hb_003411_080 Hb_149407_010 Hb_149407_010 Hb_003147_020--Hb_149407_010 Hb_002028_230 Hb_002028_230 Hb_003147_020--Hb_002028_230 Hb_162008_030 Hb_162008_030 Hb_003147_020--Hb_162008_030 Hb_029879_040 Hb_029879_040 Hb_003147_020--Hb_029879_040 Hb_000129_060 Hb_000129_060 Hb_003147_020--Hb_000129_060 Hb_000175_210--Hb_020273_020 Hb_001890_040 Hb_001890_040 Hb_000175_210--Hb_001890_040 Hb_000175_210--Hb_000000_040 Hb_028013_030 Hb_028013_030 Hb_000175_210--Hb_028013_030 Hb_006120_140 Hb_006120_140 Hb_000175_210--Hb_006120_140 Hb_001102_030 Hb_001102_030 Hb_000984_230--Hb_001102_030 Hb_006788_130 Hb_006788_130 Hb_000984_230--Hb_006788_130 Hb_000984_230--Hb_000084_230 Hb_005170_050 Hb_005170_050 Hb_000984_230--Hb_005170_050 Hb_000984_230--Hb_001235_040 Hb_008642_020 Hb_008642_020 Hb_000984_230--Hb_008642_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.637862 0.04101 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0318071 0

CAGE analysis