Hb_008642_020

Information

Type -
Description -
Location Contig8642: 26965-30589
Sequence    

Annotation

kegg
ID rcu:RCOM_0658920
description sterol desaturase, putative
nr
ID XP_002526512.1
description sterol desaturase, putative [Ricinus communis]
swissprot
ID F4HVY0
description Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1
trembl
ID B9SKI2
description Sterol desaturase, putative OS=Ricinus communis GN=RCOM_0658920 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein eceriferum 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60874: 26917-30783
cDNA
(Sanger)
(ID:Location)		 021_K21.ab1: 26917-29069 , 023_P03.ab1: 26917-28843

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008642_020 0.0 - - sterol desaturase, putative [Ricinus communis]
2 Hb_007558_060 0.0386257118 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
3 Hb_000005_390 0.0432744029 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
4 Hb_000563_110 0.0480489229 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
5 Hb_005550_060 0.0483443868 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
6 Hb_005170_050 0.0531368884 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
7 Hb_000544_150 0.0590873506 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
8 Hb_001652_090 0.0604019202 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001519_080 0.0623384609 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_002376_020 0.0686603699 - - lectin, partial [Lathyrus palustris]
11 Hb_002045_020 0.0698530004 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
12 Hb_011218_020 0.0726131587 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006485_020 0.0728680529 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
14 Hb_017959_020 0.0741512374 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
15 Hb_004881_040 0.0802735509 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
16 Hb_000175_110 0.0808800936 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
17 Hb_000155_280 0.0872554958 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
18 Hb_000023_030 0.0881448688 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
19 Hb_000005_160 0.0892019872 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_001680_060 0.0907322089 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008642_020 Hb_008642_020 Hb_007558_060 Hb_007558_060 Hb_008642_020--Hb_007558_060 Hb_000005_390 Hb_000005_390 Hb_008642_020--Hb_000005_390 Hb_000563_110 Hb_000563_110 Hb_008642_020--Hb_000563_110 Hb_005550_060 Hb_005550_060 Hb_008642_020--Hb_005550_060 Hb_005170_050 Hb_005170_050 Hb_008642_020--Hb_005170_050 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150 Hb_007558_060--Hb_000563_110 Hb_001519_080 Hb_001519_080 Hb_007558_060--Hb_001519_080 Hb_007558_060--Hb_000005_390 Hb_007558_060--Hb_005170_050 Hb_007558_060--Hb_005550_060 Hb_000005_390--Hb_005550_060 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_000544_150 Hb_000005_390--Hb_000563_110 Hb_006485_020 Hb_006485_020 Hb_000005_390--Hb_006485_020 Hb_000563_110--Hb_001652_090 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_002045_020 Hb_002045_020 Hb_000563_110--Hb_002045_020 Hb_012368_040 Hb_012368_040 Hb_000563_110--Hb_012368_040 Hb_005550_060--Hb_000544_150 Hb_002376_020 Hb_002376_020 Hb_005550_060--Hb_002376_020 Hb_005550_060--Hb_005170_050 Hb_005550_060--Hb_006485_020 Hb_005170_050--Hb_002376_020 Hb_005170_050--Hb_006485_020 Hb_017959_020 Hb_017959_020 Hb_005170_050--Hb_017959_020 Hb_005170_050--Hb_000005_390 Hb_007741_010 Hb_007741_010 Hb_000544_150--Hb_007741_010 Hb_000005_160 Hb_000005_160 Hb_000544_150--Hb_000005_160 Hb_000544_150--Hb_002376_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0134981 0.183414 136.438 13.9588 0 0.0105681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0494722 0 0 0.302227 4.84114

CAGE analysis