Hb_017959_020

Information

Type -
Description -
Location Contig17959: 15949-20057
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03440g
description POPTRDRAFT_568383; hypothetical protein
nr
ID XP_002317269.2
description hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
swissprot
ID B9RXW0
description Alpha-farnesene synthase OS=Ricinus communis GN=TPS7 PE=1 SV=2
trembl
ID B9HYU0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s03440g PE=4 SV=2
Gene Ontology
ID GO:0010334
description alpha-farnesene synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17352: 15809-19544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017959_020 0.0 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
2 Hb_006485_020 0.0284301832 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
3 Hb_000155_280 0.0307531932 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
4 Hb_002026_040 0.0533631775 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
5 Hb_005170_050 0.0566662837 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
6 Hb_011218_020 0.0594697201 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002376_020 0.0595911439 - - lectin, partial [Lathyrus palustris]
8 Hb_000005_390 0.0678495475 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
9 Hb_013849_010 0.0693879245 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_001652_090 0.0696472041 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004117_240 0.0703455536 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
12 Hb_005550_060 0.0734543983 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
13 Hb_008642_020 0.0741512374 - - sterol desaturase, putative [Ricinus communis]
14 Hb_028995_020 0.0799666123 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
15 Hb_002843_200 0.0812928527 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004228_050 0.0813285975 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
17 Hb_000592_150 0.0813546696 - - Os05g0413200 [Oryza sativa Japonica Group]
18 Hb_002305_040 0.0813959047 - - TMV resistance protein N, putative [Ricinus communis]
19 Hb_075653_010 0.0814467098 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
20 Hb_000265_040 0.0817771401 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]

Gene co-expression network

sample Hb_017959_020 Hb_017959_020 Hb_006485_020 Hb_006485_020 Hb_017959_020--Hb_006485_020 Hb_000155_280 Hb_000155_280 Hb_017959_020--Hb_000155_280 Hb_002026_040 Hb_002026_040 Hb_017959_020--Hb_002026_040 Hb_005170_050 Hb_005170_050 Hb_017959_020--Hb_005170_050 Hb_011218_020 Hb_011218_020 Hb_017959_020--Hb_011218_020 Hb_002376_020 Hb_002376_020 Hb_017959_020--Hb_002376_020 Hb_006485_020--Hb_000155_280 Hb_006485_020--Hb_002376_020 Hb_006485_020--Hb_002026_040 Hb_006485_020--Hb_005170_050 Hb_000005_390 Hb_000005_390 Hb_006485_020--Hb_000005_390 Hb_000155_280--Hb_002026_040 Hb_013849_010 Hb_013849_010 Hb_000155_280--Hb_013849_010 Hb_000155_280--Hb_002376_020 Hb_000155_280--Hb_005170_050 Hb_002026_040--Hb_013849_010 Hb_002585_050 Hb_002585_050 Hb_002026_040--Hb_002585_050 Hb_007816_010 Hb_007816_010 Hb_002026_040--Hb_007816_010 Hb_000592_150 Hb_000592_150 Hb_002026_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_002026_040--Hb_004228_050 Hb_005170_050--Hb_002376_020 Hb_008642_020 Hb_008642_020 Hb_005170_050--Hb_008642_020 Hb_005550_060 Hb_005550_060 Hb_005170_050--Hb_005550_060 Hb_005170_050--Hb_000005_390 Hb_006332_030 Hb_006332_030 Hb_011218_020--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011218_020--Hb_028995_020 Hb_000563_110 Hb_000563_110 Hb_011218_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_011218_020--Hb_001652_090 Hb_004117_240 Hb_004117_240 Hb_011218_020--Hb_004117_240 Hb_002376_020--Hb_005550_060 Hb_008252_010 Hb_008252_010 Hb_002376_020--Hb_008252_010 Hb_002376_020--Hb_000005_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 11.7106 1.5949 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0158671 0.161558

CAGE analysis