Hb_013849_010

Information

Type -
Description -
Location Contig13849: 9246-11319
Sequence    

Annotation

kegg
ID eus:EUTSA_v10014451mg
description hypothetical protein
nr
ID 2G4L
description Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
swissprot
ID P52704
description (S)-hydroxynitrile lyase OS=Hevea brasiliensis GN=HNL PE=1 SV=1
trembl
ID O49897
description Alpha-hydroxynitrile lyase OS=Manihot esculenta GN=HNL4 PE=4 SV=1
Gene Ontology
ID GO:0046593
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10547: 9276-11361 , PASA_asmbl_10548: 9737-10553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013849_010 0.0 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
2 Hb_002026_040 0.0229643325 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
3 Hb_011846_020 0.0277011609 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
4 Hb_002837_010 0.0278193168 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
5 Hb_002186_150 0.0279040291 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
6 Hb_046150_010 0.0279088831 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
7 Hb_004744_030 0.0284682786 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_000500_380 0.0286386726 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
9 Hb_007816_010 0.0288355855 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
10 Hb_002585_050 0.0319344787 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004447_040 0.0330063771 - - cyclin d, putative [Ricinus communis]
12 Hb_003994_210 0.0338429448 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000844_120 0.0341833003 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
14 Hb_014109_030 0.0358458796 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
15 Hb_000592_150 0.0372911979 - - Os05g0413200 [Oryza sativa Japonica Group]
16 Hb_004228_050 0.0379245644 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
17 Hb_002305_040 0.0419582046 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_075653_010 0.0426955062 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
19 Hb_000227_010 0.0427650188 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
20 Hb_000265_040 0.0458230383 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]

Gene co-expression network

sample Hb_013849_010 Hb_013849_010 Hb_002026_040 Hb_002026_040 Hb_013849_010--Hb_002026_040 Hb_011846_020 Hb_011846_020 Hb_013849_010--Hb_011846_020 Hb_002837_010 Hb_002837_010 Hb_013849_010--Hb_002837_010 Hb_002186_150 Hb_002186_150 Hb_013849_010--Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_013849_010--Hb_046150_010 Hb_004744_030 Hb_004744_030 Hb_013849_010--Hb_004744_030 Hb_000155_280 Hb_000155_280 Hb_002026_040--Hb_000155_280 Hb_002585_050 Hb_002585_050 Hb_002026_040--Hb_002585_050 Hb_007816_010 Hb_007816_010 Hb_002026_040--Hb_007816_010 Hb_000592_150 Hb_000592_150 Hb_002026_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_002026_040--Hb_004228_050 Hb_011846_020--Hb_002186_150 Hb_011846_020--Hb_046150_010 Hb_011846_020--Hb_004744_030 Hb_000500_380 Hb_000500_380 Hb_011846_020--Hb_000500_380 Hb_011846_020--Hb_002837_010 Hb_011846_020--Hb_007816_010 Hb_002837_010--Hb_007816_010 Hb_002837_010--Hb_002186_150 Hb_002837_010--Hb_046150_010 Hb_002837_010--Hb_004744_030 Hb_002837_010--Hb_000500_380 Hb_002186_150--Hb_046150_010 Hb_002186_150--Hb_004744_030 Hb_002186_150--Hb_000500_380 Hb_002186_150--Hb_007816_010 Hb_046150_010--Hb_004744_030 Hb_046150_010--Hb_000500_380 Hb_046150_010--Hb_007816_010 Hb_004744_030--Hb_000500_380 Hb_004447_040 Hb_004447_040 Hb_004744_030--Hb_004447_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0567442 1033.66 114.099 0 0.0252325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.6699

CAGE analysis