Hb_002186_150

Information

Type -
Description -
Location Contig2186: 162933-163457
Sequence    

Annotation

kegg
ID rcu:RCOM_0401210
description hypothetical protein
nr
ID XP_012078088.1
description PREDICTED: F-box protein CPR30-like [Jatropha curcas]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A067KM83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002186_150 0.0 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
2 Hb_046150_010 3.35226e-05 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
3 Hb_011846_020 0.0018070331 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
4 Hb_004744_030 0.0029047743 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
5 Hb_000500_380 0.0035748506 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
6 Hb_002837_010 0.0074173779 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
7 Hb_007816_010 0.0123401168 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
8 Hb_004447_040 0.0140642075 - - cyclin d, putative [Ricinus communis]
9 Hb_003994_210 0.0155504156 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000844_120 0.0161336898 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
11 Hb_014109_030 0.0188424747 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
12 Hb_002585_050 0.0200745561 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013849_010 0.0279040291 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_000592_150 0.0290965869 - - Os05g0413200 [Oryza sativa Japonica Group]
15 Hb_004228_050 0.0300296442 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
16 Hb_000227_010 0.0353312592 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
17 Hb_002305_040 0.0356250285 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_075653_010 0.0365978946 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
19 Hb_000265_040 0.0406023047 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
20 Hb_001536_070 0.0407173446 - - hypothetical protein JCGZ_20053 [Jatropha curcas]

Gene co-expression network

sample Hb_002186_150 Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_002186_150--Hb_046150_010 Hb_011846_020 Hb_011846_020 Hb_002186_150--Hb_011846_020 Hb_004744_030 Hb_004744_030 Hb_002186_150--Hb_004744_030 Hb_000500_380 Hb_000500_380 Hb_002186_150--Hb_000500_380 Hb_002837_010 Hb_002837_010 Hb_002186_150--Hb_002837_010 Hb_007816_010 Hb_007816_010 Hb_002186_150--Hb_007816_010 Hb_046150_010--Hb_011846_020 Hb_046150_010--Hb_004744_030 Hb_046150_010--Hb_000500_380 Hb_046150_010--Hb_002837_010 Hb_046150_010--Hb_007816_010 Hb_011846_020--Hb_004744_030 Hb_011846_020--Hb_000500_380 Hb_011846_020--Hb_002837_010 Hb_011846_020--Hb_007816_010 Hb_004744_030--Hb_000500_380 Hb_004744_030--Hb_002837_010 Hb_004447_040 Hb_004447_040 Hb_004744_030--Hb_004447_040 Hb_000500_380--Hb_004447_040 Hb_000500_380--Hb_002837_010 Hb_002837_010--Hb_007816_010 Hb_002585_050 Hb_002585_050 Hb_007816_010--Hb_002585_050 Hb_007816_010--Hb_004744_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.537638 0.0574832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis