Hb_000500_380

Information

Type -
Description -
Location Contig500: 303927-306571
Sequence    

Annotation

kegg
ID rcu:RCOM_1252960
description zinc finger protein, putative
nr
ID XP_012091861.1
description PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
swissprot
ID Q9C7N4
description GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1
trembl
ID A0A067JNU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21640 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g29670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_380 0.0 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
2 Hb_004744_030 0.0006700878 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_046150_010 0.0035413287 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
4 Hb_002186_150 0.0035748506 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_011846_020 0.0053818264 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
6 Hb_004447_040 0.0104902624 - - cyclin d, putative [Ricinus communis]
7 Hb_002837_010 0.0109917554 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
8 Hb_003994_210 0.0119767126 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000844_120 0.0125600897 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
10 Hb_014109_030 0.0152694124 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
11 Hb_007816_010 0.0159138424 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_002585_050 0.023646741 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013849_010 0.0286386726 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_000592_150 0.0326662218 - - Os05g0413200 [Oryza sativa Japonica Group]
15 Hb_004228_050 0.0335989713 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
16 Hb_000227_010 0.0378930541 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
17 Hb_002305_040 0.0391923434 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_075653_010 0.0401648311 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
19 Hb_021622_010 0.0418712885 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
20 Hb_012573_060 0.043943967 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]

Gene co-expression network

sample Hb_000500_380 Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_000500_380--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_000500_380--Hb_046150_010 Hb_002186_150 Hb_002186_150 Hb_000500_380--Hb_002186_150 Hb_011846_020 Hb_011846_020 Hb_000500_380--Hb_011846_020 Hb_004447_040 Hb_004447_040 Hb_000500_380--Hb_004447_040 Hb_002837_010 Hb_002837_010 Hb_000500_380--Hb_002837_010 Hb_004744_030--Hb_046150_010 Hb_004744_030--Hb_002186_150 Hb_004744_030--Hb_011846_020 Hb_004744_030--Hb_002837_010 Hb_004744_030--Hb_004447_040 Hb_046150_010--Hb_002186_150 Hb_046150_010--Hb_011846_020 Hb_046150_010--Hb_002837_010 Hb_007816_010 Hb_007816_010 Hb_046150_010--Hb_007816_010 Hb_002186_150--Hb_011846_020 Hb_002186_150--Hb_002837_010 Hb_002186_150--Hb_007816_010 Hb_011846_020--Hb_002837_010 Hb_011846_020--Hb_007816_010 Hb_003994_210 Hb_003994_210 Hb_004447_040--Hb_003994_210 Hb_000844_120 Hb_000844_120 Hb_004447_040--Hb_000844_120 Hb_014109_030 Hb_014109_030 Hb_004447_040--Hb_014109_030 Hb_004447_040--Hb_046150_010 Hb_002837_010--Hb_007816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.96902 0.516266 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis