Hb_004447_040

Information

Type -
Description -
Location Contig4447: 52345-53922
Sequence    

Annotation

kegg
ID rcu:RCOM_0451720
description cyclin d, putative
nr
ID XP_002531552.1
description cyclin d, putative [Ricinus communis]
swissprot
ID Q9LZM0
description Putative cyclin-D7-1 OS=Arabidopsis thaliana GN=CYCD7-1 PE=3 SV=1
trembl
ID B9SZY3
description Cyclin d, putative OS=Ricinus communis GN=RCOM_0451720 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-d7-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42785: 52416-52972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004447_040 0.0 - - cyclin d, putative [Ricinus communis]
2 Hb_003994_210 0.0014867845 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000844_120 0.0020703163 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
4 Hb_014109_030 0.0047805328 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
5 Hb_000500_380 0.0104902624 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
6 Hb_004744_030 0.0111602145 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_046150_010 0.0140306962 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
8 Hb_002186_150 0.0140642075 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_011846_020 0.015870558 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
10 Hb_002837_010 0.0214778489 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
11 Hb_007816_010 0.0263967825 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_013849_010 0.0330063771 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
13 Hb_012573_060 0.0334838554 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
14 Hb_002585_050 0.0341232208 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000680_080 0.0373999526 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
16 Hb_022929_010 0.0378905489 - - zinc/iron transporter, putative [Ricinus communis]
17 Hb_002030_140 0.0393345471 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
18 Hb_021622_010 0.039916337 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
19 Hb_000592_150 0.0431329764 - - Os05g0413200 [Oryza sativa Japonica Group]
20 Hb_004228_050 0.0440645921 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]

Gene co-expression network

sample Hb_004447_040 Hb_004447_040 Hb_003994_210 Hb_003994_210 Hb_004447_040--Hb_003994_210 Hb_000844_120 Hb_000844_120 Hb_004447_040--Hb_000844_120 Hb_014109_030 Hb_014109_030 Hb_004447_040--Hb_014109_030 Hb_000500_380 Hb_000500_380 Hb_004447_040--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_004447_040--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_004447_040--Hb_046150_010 Hb_003994_210--Hb_000844_120 Hb_003994_210--Hb_014109_030 Hb_003994_210--Hb_000500_380 Hb_003994_210--Hb_004744_030 Hb_003994_210--Hb_046150_010 Hb_000844_120--Hb_014109_030 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_000844_120--Hb_046150_010 Hb_014109_030--Hb_000500_380 Hb_014109_030--Hb_004744_030 Hb_014109_030--Hb_046150_010 Hb_000500_380--Hb_004744_030 Hb_000500_380--Hb_046150_010 Hb_002186_150 Hb_002186_150 Hb_000500_380--Hb_002186_150 Hb_011846_020 Hb_011846_020 Hb_000500_380--Hb_011846_020 Hb_002837_010 Hb_002837_010 Hb_000500_380--Hb_002837_010 Hb_004744_030--Hb_046150_010 Hb_004744_030--Hb_002186_150 Hb_004744_030--Hb_011846_020 Hb_004744_030--Hb_002837_010 Hb_046150_010--Hb_002186_150 Hb_046150_010--Hb_011846_020 Hb_046150_010--Hb_002837_010 Hb_007816_010 Hb_007816_010 Hb_046150_010--Hb_007816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.360108 0.0343275 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis