Hb_014109_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig14109: 17651-19501
Sequence    

Annotation

kegg
ID rcu:RCOM_1580560
description DNA binding protein, putative
nr
ID XP_012090117.1
description PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
swissprot
ID Q700C7
description Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH PE=1 SV=1
trembl
ID B9RIM0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1580560 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor speechless-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11117: 16832-18029 , PASA_asmbl_11118: 18096-19512 , PASA_asmbl_11119: 19654-19851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014109_030 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
2 Hb_000844_120 0.0027102667 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
3 Hb_003994_210 0.003293792 - - zinc finger protein, putative [Ricinus communis]
4 Hb_004447_040 0.0047805328 - - cyclin d, putative [Ricinus communis]
5 Hb_000500_380 0.0152694124 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
6 Hb_004744_030 0.0159392145 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_046150_010 0.0188089726 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
8 Hb_002186_150 0.0188424747 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_011846_020 0.0206483029 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
10 Hb_002837_010 0.026253657 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
11 Hb_012573_060 0.028712702 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
12 Hb_007816_010 0.0311705118 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
13 Hb_000680_080 0.032631459 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
14 Hb_022929_010 0.0331224141 - - zinc/iron transporter, putative [Ricinus communis]
15 Hb_002030_140 0.0345675015 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
16 Hb_013849_010 0.0358458796 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
17 Hb_002585_050 0.0388930048 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021622_010 0.0399165159 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
19 Hb_001546_100 0.0406177672 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
20 Hb_000592_150 0.0478971731 - - Os05g0413200 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_014109_030 Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_014109_030--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_014109_030--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_014109_030--Hb_004447_040 Hb_000500_380 Hb_000500_380 Hb_014109_030--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_014109_030--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_014109_030--Hb_046150_010 Hb_000844_120--Hb_003994_210 Hb_000844_120--Hb_004447_040 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_000844_120--Hb_046150_010 Hb_003994_210--Hb_004447_040 Hb_003994_210--Hb_000500_380 Hb_003994_210--Hb_004744_030 Hb_003994_210--Hb_046150_010 Hb_004447_040--Hb_000500_380 Hb_004447_040--Hb_004744_030 Hb_004447_040--Hb_046150_010 Hb_000500_380--Hb_004744_030 Hb_000500_380--Hb_046150_010 Hb_002186_150 Hb_002186_150 Hb_000500_380--Hb_002186_150 Hb_011846_020 Hb_011846_020 Hb_000500_380--Hb_011846_020 Hb_002837_010 Hb_002837_010 Hb_000500_380--Hb_002837_010 Hb_004744_030--Hb_046150_010 Hb_004744_030--Hb_002186_150 Hb_004744_030--Hb_011846_020 Hb_004744_030--Hb_002837_010 Hb_046150_010--Hb_002186_150 Hb_046150_010--Hb_011846_020 Hb_046150_010--Hb_002837_010 Hb_007816_010 Hb_007816_010 Hb_046150_010--Hb_007816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.19401 0.384016 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis