Hb_011846_020

Information

Type -
Description -
Location Contig11846: 35071-35859
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13390g
description hypothetical protein
nr
ID XP_006371584.1
description hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
swissprot
ID Q8S8I4
description Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1
trembl
ID B9N2A9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13390g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05482: 34900-35930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011846_020 0.0 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
2 Hb_002186_150 0.0018070331 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
3 Hb_046150_010 0.0018405555 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
4 Hb_004744_030 0.0047117668 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
5 Hb_000500_380 0.0053818264 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
6 Hb_002837_010 0.0056104651 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
7 Hb_007816_010 0.0105334549 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
8 Hb_004447_040 0.015870558 - - cyclin d, putative [Ricinus communis]
9 Hb_003994_210 0.01735662 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000844_120 0.0179398329 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
11 Hb_002585_050 0.0182685498 - - conserved hypothetical protein [Ricinus communis]
12 Hb_014109_030 0.0206483029 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
13 Hb_000592_150 0.027291727 - - Os05g0413200 [Oryza sativa Japonica Group]
14 Hb_013849_010 0.0277011609 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
15 Hb_004228_050 0.0282249252 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
16 Hb_002305_040 0.033821239 - - TMV resistance protein N, putative [Ricinus communis]
17 Hb_000227_010 0.0341050895 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
18 Hb_075653_010 0.0347942812 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
19 Hb_000265_040 0.0387994598 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
20 Hb_001536_070 0.0389145229 - - hypothetical protein JCGZ_20053 [Jatropha curcas]

Gene co-expression network

sample Hb_011846_020 Hb_011846_020 Hb_002186_150 Hb_002186_150 Hb_011846_020--Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_011846_020--Hb_046150_010 Hb_004744_030 Hb_004744_030 Hb_011846_020--Hb_004744_030 Hb_000500_380 Hb_000500_380 Hb_011846_020--Hb_000500_380 Hb_002837_010 Hb_002837_010 Hb_011846_020--Hb_002837_010 Hb_007816_010 Hb_007816_010 Hb_011846_020--Hb_007816_010 Hb_002186_150--Hb_046150_010 Hb_002186_150--Hb_004744_030 Hb_002186_150--Hb_000500_380 Hb_002186_150--Hb_002837_010 Hb_002186_150--Hb_007816_010 Hb_046150_010--Hb_004744_030 Hb_046150_010--Hb_000500_380 Hb_046150_010--Hb_002837_010 Hb_046150_010--Hb_007816_010 Hb_004744_030--Hb_000500_380 Hb_004744_030--Hb_002837_010 Hb_004447_040 Hb_004447_040 Hb_004744_030--Hb_004447_040 Hb_000500_380--Hb_004447_040 Hb_000500_380--Hb_002837_010 Hb_002837_010--Hb_007816_010 Hb_002585_050 Hb_002585_050 Hb_007816_010--Hb_002585_050 Hb_007816_010--Hb_004744_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 10.2731 1.11427 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis