Hb_002837_010

Information

Type -
Description -
Location Contig2837: 18729-19991
Sequence    

Annotation

kegg
ID pop:POPTR_0497s00200g
description hypothetical protein
nr
ID XP_006387887.1
description hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
swissprot
ID Q84TG3
description E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1
trembl
ID U7E0Y8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0497s00200g PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase pub23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_010 0.0 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
2 Hb_007816_010 0.0049234411 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
3 Hb_011846_020 0.0056104651 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
4 Hb_002186_150 0.0074173779 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_046150_010 0.0074508975 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
6 Hb_004744_030 0.0103217919 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_000500_380 0.0109917554 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
8 Hb_002585_050 0.0126600583 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004447_040 0.0214778489 - - cyclin d, putative [Ricinus communis]
10 Hb_000592_150 0.021686199 - - Os05g0413200 [Oryza sativa Japonica Group]
11 Hb_004228_050 0.0226197735 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
12 Hb_003994_210 0.0229633594 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000844_120 0.0235463432 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
14 Hb_014109_030 0.026253657 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
15 Hb_013849_010 0.0278193168 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
16 Hb_002305_040 0.0282186065 - - TMV resistance protein N, putative [Ricinus communis]
17 Hb_075653_010 0.0291921318 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
18 Hb_000227_010 0.0306639991 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
19 Hb_000265_040 0.0331994363 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
20 Hb_001536_070 0.0333145636 - - hypothetical protein JCGZ_20053 [Jatropha curcas]

Gene co-expression network

sample Hb_002837_010 Hb_002837_010 Hb_007816_010 Hb_007816_010 Hb_002837_010--Hb_007816_010 Hb_011846_020 Hb_011846_020 Hb_002837_010--Hb_011846_020 Hb_002186_150 Hb_002186_150 Hb_002837_010--Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_002837_010--Hb_046150_010 Hb_004744_030 Hb_004744_030 Hb_002837_010--Hb_004744_030 Hb_000500_380 Hb_000500_380 Hb_002837_010--Hb_000500_380 Hb_002585_050 Hb_002585_050 Hb_007816_010--Hb_002585_050 Hb_007816_010--Hb_011846_020 Hb_007816_010--Hb_002186_150 Hb_007816_010--Hb_046150_010 Hb_007816_010--Hb_004744_030 Hb_011846_020--Hb_002186_150 Hb_011846_020--Hb_046150_010 Hb_011846_020--Hb_004744_030 Hb_011846_020--Hb_000500_380 Hb_002186_150--Hb_046150_010 Hb_002186_150--Hb_004744_030 Hb_002186_150--Hb_000500_380 Hb_046150_010--Hb_004744_030 Hb_046150_010--Hb_000500_380 Hb_004744_030--Hb_000500_380 Hb_004447_040 Hb_004447_040 Hb_004744_030--Hb_004447_040 Hb_000500_380--Hb_004447_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.584329 0.0662351 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis