Hb_000155_280

Information

Type -
Description -
Location Contig155: 370023-372235
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05120g
description POPTRDRAFT_817830; GDSL-motif lipase/hydrolase family protein
nr
ID XP_012091703.1
description PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
swissprot
ID Q9FJ41
description GDSL esterase/lipase At5g45950 OS=Arabidopsis thaliana GN=At5g45950 PE=2 SV=1
trembl
ID A0A067JM09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21511 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g45950

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13448: 369890-372281 , PASA_asmbl_13449: 370628-370896 , PASA_asmbl_13450: 372312-372399
cDNA
(Sanger)
(ID:Location)		 009_N20.ab1: 369915-370028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_280 0.0 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
2 Hb_006485_020 0.0211524632 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
3 Hb_002026_040 0.0302992498 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
4 Hb_017959_020 0.0307531932 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
5 Hb_013849_010 0.0491113354 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
6 Hb_002376_020 0.0527848271 - - lectin, partial [Lathyrus palustris]
7 Hb_005170_050 0.0642429385 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
8 Hb_000592_150 0.0653579213 - - Os05g0413200 [Oryza sativa Japonica Group]
9 Hb_004228_050 0.0654210287 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
10 Hb_002585_050 0.065432964 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002305_040 0.0660748605 - - TMV resistance protein N, putative [Ricinus communis]
12 Hb_075653_010 0.0662360984 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
13 Hb_007816_010 0.0664759585 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
14 Hb_000265_040 0.0670444539 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
15 Hb_001536_070 0.0670710658 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
16 Hb_107495_020 0.0672470522 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
17 Hb_002837_010 0.0675915962 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
18 Hb_006953_010 0.0679800851 - - cytochrome P450, putative [Ricinus communis]
19 Hb_002049_040 0.0685929867 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
20 Hb_004117_240 0.068859884 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]

Gene co-expression network

sample Hb_000155_280 Hb_000155_280 Hb_006485_020 Hb_006485_020 Hb_000155_280--Hb_006485_020 Hb_002026_040 Hb_002026_040 Hb_000155_280--Hb_002026_040 Hb_017959_020 Hb_017959_020 Hb_000155_280--Hb_017959_020 Hb_013849_010 Hb_013849_010 Hb_000155_280--Hb_013849_010 Hb_002376_020 Hb_002376_020 Hb_000155_280--Hb_002376_020 Hb_005170_050 Hb_005170_050 Hb_000155_280--Hb_005170_050 Hb_006485_020--Hb_017959_020 Hb_006485_020--Hb_002376_020 Hb_006485_020--Hb_002026_040 Hb_006485_020--Hb_005170_050 Hb_000005_390 Hb_000005_390 Hb_006485_020--Hb_000005_390 Hb_002026_040--Hb_013849_010 Hb_002585_050 Hb_002585_050 Hb_002026_040--Hb_002585_050 Hb_007816_010 Hb_007816_010 Hb_002026_040--Hb_007816_010 Hb_000592_150 Hb_000592_150 Hb_002026_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_002026_040--Hb_004228_050 Hb_017959_020--Hb_002026_040 Hb_017959_020--Hb_005170_050 Hb_011218_020 Hb_011218_020 Hb_017959_020--Hb_011218_020 Hb_017959_020--Hb_002376_020 Hb_011846_020 Hb_011846_020 Hb_013849_010--Hb_011846_020 Hb_002837_010 Hb_002837_010 Hb_013849_010--Hb_002837_010 Hb_002186_150 Hb_002186_150 Hb_013849_010--Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_013849_010--Hb_046150_010 Hb_004744_030 Hb_004744_030 Hb_013849_010--Hb_004744_030 Hb_005550_060 Hb_005550_060 Hb_002376_020--Hb_005550_060 Hb_008252_010 Hb_008252_010 Hb_002376_020--Hb_008252_010 Hb_002376_020--Hb_005170_050 Hb_002376_020--Hb_000005_390 Hb_008642_020 Hb_008642_020 Hb_005170_050--Hb_008642_020 Hb_005170_050--Hb_005550_060 Hb_005170_050--Hb_000005_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0167653 101.967 13.2206 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.969066

CAGE analysis