Hb_006485_020

Information

Type -
Description -
Location Contig6485: 29583-30294
Sequence    

Annotation

kegg
ID sly:101251765
description uncharacterized LOC101251765
nr
ID KDP45227.1
description hypothetical protein JCGZ_15092 [Jatropha curcas]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067LA31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15092 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52456: 29765-30407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006485_020 0.0 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
2 Hb_000155_280 0.0211524632 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
3 Hb_017959_020 0.0284301832 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
4 Hb_002376_020 0.0396811083 - - lectin, partial [Lathyrus palustris]
5 Hb_002026_040 0.0479269133 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
6 Hb_005170_050 0.0556012136 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
7 Hb_000005_390 0.056357552 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
8 Hb_005550_060 0.0569994721 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
9 Hb_013849_010 0.0621639421 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_001652_090 0.0661238525 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008642_020 0.0728680529 - - sterol desaturase, putative [Ricinus communis]
12 Hb_011218_020 0.0737652326 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008252_010 0.0754516985 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
14 Hb_002843_200 0.0766165742 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002585_050 0.0794616608 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007816_010 0.0795478903 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
17 Hb_002837_010 0.079990819 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
18 Hb_000592_150 0.0803030507 - - Os05g0413200 [Oryza sativa Japonica Group]
19 Hb_004117_240 0.0803916899 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
20 Hb_004228_050 0.0804470681 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]

Gene co-expression network

sample Hb_006485_020 Hb_006485_020 Hb_000155_280 Hb_000155_280 Hb_006485_020--Hb_000155_280 Hb_017959_020 Hb_017959_020 Hb_006485_020--Hb_017959_020 Hb_002376_020 Hb_002376_020 Hb_006485_020--Hb_002376_020 Hb_002026_040 Hb_002026_040 Hb_006485_020--Hb_002026_040 Hb_005170_050 Hb_005170_050 Hb_006485_020--Hb_005170_050 Hb_000005_390 Hb_000005_390 Hb_006485_020--Hb_000005_390 Hb_000155_280--Hb_002026_040 Hb_000155_280--Hb_017959_020 Hb_013849_010 Hb_013849_010 Hb_000155_280--Hb_013849_010 Hb_000155_280--Hb_002376_020 Hb_000155_280--Hb_005170_050 Hb_017959_020--Hb_002026_040 Hb_017959_020--Hb_005170_050 Hb_011218_020 Hb_011218_020 Hb_017959_020--Hb_011218_020 Hb_017959_020--Hb_002376_020 Hb_005550_060 Hb_005550_060 Hb_002376_020--Hb_005550_060 Hb_008252_010 Hb_008252_010 Hb_002376_020--Hb_008252_010 Hb_002376_020--Hb_005170_050 Hb_002376_020--Hb_000005_390 Hb_002026_040--Hb_013849_010 Hb_002585_050 Hb_002585_050 Hb_002026_040--Hb_002585_050 Hb_007816_010 Hb_007816_010 Hb_002026_040--Hb_007816_010 Hb_000592_150 Hb_000592_150 Hb_002026_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_002026_040--Hb_004228_050 Hb_008642_020 Hb_008642_020 Hb_005170_050--Hb_008642_020 Hb_005170_050--Hb_005550_060 Hb_005170_050--Hb_000005_390 Hb_000005_390--Hb_005550_060 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_008642_020 Hb_000544_150 Hb_000544_150 Hb_000005_390--Hb_000544_150 Hb_000563_110 Hb_000563_110 Hb_000005_390--Hb_000563_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 27.3258 3.33637 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.389811

CAGE analysis