Hb_008252_010

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig8252: 11724-14098
Sequence    

Annotation

kegg
ID vvi:100267708
description protein YABBY 4
nr
ID XP_002266233.1
description PREDICTED: protein YABBY 4 [Vitis vinifera]
swissprot
ID O22152
description Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
trembl
ID D7TN10
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00070 PE=4 SV=1
Gene Ontology
ID GO:0007275
description protein yabby 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59699: 11638-14085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008252_010 0.0 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
2 Hb_162008_020 0.0239665855 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
3 Hb_002376_020 0.0371547795 - - lectin, partial [Lathyrus palustris]
4 Hb_121680_010 0.0438150336 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
5 Hb_162008_040 0.048046622 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
6 Hb_005550_060 0.05776755 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
7 Hb_000212_170 0.0580538233 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
8 Hb_001680_060 0.0591283288 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000544_150 0.0645047295 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
10 Hb_004881_040 0.0668045949 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
11 Hb_005170_050 0.0720884653 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
12 Hb_005854_060 0.0736380912 - - short-chain dehydrogenase, putative [Ricinus communis]
13 Hb_000190_200 0.0736493559 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
14 Hb_001546_100 0.0745400703 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
15 Hb_002030_140 0.074731942 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
16 Hb_022929_010 0.0748500572 - - zinc/iron transporter, putative [Ricinus communis]
17 Hb_000680_080 0.0748964758 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
18 Hb_012573_060 0.075380289 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
19 Hb_006485_020 0.0754516985 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
20 Hb_003398_110 0.0754929713 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]

Gene co-expression network

sample Hb_008252_010 Hb_008252_010 Hb_162008_020 Hb_162008_020 Hb_008252_010--Hb_162008_020 Hb_002376_020 Hb_002376_020 Hb_008252_010--Hb_002376_020 Hb_121680_010 Hb_121680_010 Hb_008252_010--Hb_121680_010 Hb_162008_040 Hb_162008_040 Hb_008252_010--Hb_162008_040 Hb_005550_060 Hb_005550_060 Hb_008252_010--Hb_005550_060 Hb_000212_170 Hb_000212_170 Hb_008252_010--Hb_000212_170 Hb_162008_020--Hb_121680_010 Hb_162008_020--Hb_162008_040 Hb_003398_110 Hb_003398_110 Hb_162008_020--Hb_003398_110 Hb_000190_200 Hb_000190_200 Hb_162008_020--Hb_000190_200 Hb_162008_020--Hb_002376_020 Hb_002376_020--Hb_005550_060 Hb_006485_020 Hb_006485_020 Hb_002376_020--Hb_006485_020 Hb_005170_050 Hb_005170_050 Hb_002376_020--Hb_005170_050 Hb_000155_280 Hb_000155_280 Hb_002376_020--Hb_000155_280 Hb_000005_390 Hb_000005_390 Hb_002376_020--Hb_000005_390 Hb_121680_010--Hb_162008_040 Hb_004019_130 Hb_004019_130 Hb_121680_010--Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_121680_010--Hb_000129_060 Hb_121680_010--Hb_000212_170 Hb_162008_040--Hb_000212_170 Hb_005854_060 Hb_005854_060 Hb_162008_040--Hb_005854_060 Hb_001546_100 Hb_001546_100 Hb_162008_040--Hb_001546_100 Hb_000544_150 Hb_000544_150 Hb_005550_060--Hb_000544_150 Hb_005550_060--Hb_000005_390 Hb_008642_020 Hb_008642_020 Hb_005550_060--Hb_008642_020 Hb_005550_060--Hb_005170_050 Hb_005550_060--Hb_006485_020 Hb_002030_140 Hb_002030_140 Hb_000212_170--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_000212_170--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000212_170--Hb_000680_080 Hb_000212_170--Hb_001546_100 Hb_012573_060 Hb_012573_060 Hb_000212_170--Hb_012573_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 10.7449 0.681603 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.127874

CAGE analysis