Hb_004019_130

Information

Type transcription factor
Description TF Family: LOB
Location Contig4019: 148520-149188
Sequence    

Annotation

kegg
ID vvi:100262280
description LOB domain-containing protein 6
nr
ID XP_012078919.1
description PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
swissprot
ID O04479
description LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1
trembl
ID A0A067K8Q0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13417 PE=4 SV=1
Gene Ontology
ID GO:0005654
description lob domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39907: 149143-149846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004019_130 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
2 Hb_000129_060 0.0057407517 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
3 Hb_162008_030 0.0227013473 - - cytochrome p450 [Ageratina adenophora]
4 Hb_001546_100 0.0339303072 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
5 Hb_002030_140 0.0399758934 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
6 Hb_022929_010 0.0414177561 - - zinc/iron transporter, putative [Ricinus communis]
7 Hb_029879_040 0.0416054276 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
8 Hb_002028_230 0.0418559004 - - Pectinesterase-3 precursor, putative [Ricinus communis]
9 Hb_000680_080 0.0419074358 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
10 Hb_012573_060 0.0458128116 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
11 Hb_149407_010 0.0470721216 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
12 Hb_121680_010 0.0506931334 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
13 Hb_000077_430 0.0552964487 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
14 Hb_000212_170 0.0590585936 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
15 Hb_162008_040 0.0627481718 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
16 Hb_078641_020 0.068500192 - - Pectinesterase-2 precursor, putative [Ricinus communis]
17 Hb_014109_030 0.0742726229 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
18 Hb_000753_220 0.0750095401 - - hypothetical protein RCOM_1467930 [Ricinus communis]
19 Hb_003411_080 0.0766193487 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000844_120 0.0769466074 - - hypothetical protein JCGZ_09179 [Jatropha curcas]

Gene co-expression network

sample Hb_004019_130 Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_004019_130--Hb_000129_060 Hb_162008_030 Hb_162008_030 Hb_004019_130--Hb_162008_030 Hb_001546_100 Hb_001546_100 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_029879_040 Hb_029879_040 Hb_004019_130--Hb_029879_040 Hb_000129_060--Hb_162008_030 Hb_000129_060--Hb_029879_040 Hb_000129_060--Hb_001546_100 Hb_002028_230 Hb_002028_230 Hb_000129_060--Hb_002028_230 Hb_149407_010 Hb_149407_010 Hb_000129_060--Hb_149407_010 Hb_162008_030--Hb_149407_010 Hb_162008_030--Hb_029879_040 Hb_162008_030--Hb_002028_230 Hb_162008_030--Hb_001546_100 Hb_001546_100--Hb_002030_140 Hb_001546_100--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_001546_100--Hb_000680_080 Hb_012573_060 Hb_012573_060 Hb_001546_100--Hb_012573_060 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_002030_140--Hb_022929_010 Hb_002030_140--Hb_000680_080 Hb_002030_140--Hb_012573_060 Hb_014109_030 Hb_014109_030 Hb_002030_140--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_002030_140--Hb_000844_120 Hb_022929_010--Hb_000680_080 Hb_022929_010--Hb_012573_060 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_029879_040--Hb_149407_010 Hb_029879_040--Hb_002028_230 Hb_029879_040--Hb_000077_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.64471 0.0717824 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis