Hb_012573_060

Information

Type -
Description -
Location Contig12573: 56737-61002
Sequence    

Annotation

kegg
ID vvi:100245822
description DEAD-box ATP-dependent RNA helicase 52C-like
nr
ID XP_002285108.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
swissprot
ID Q6Z4K6
description DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1
trembl
ID F6HH79
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05090 PE=4 SV=1
Gene Ontology
ID GO:0016787
description dead-box atp-dependent rna helicase 37-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012573_060 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
2 Hb_000680_080 0.0039271415 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
3 Hb_022929_010 0.0044193033 - - zinc/iron transporter, putative [Ricinus communis]
4 Hb_002030_140 0.0058681487 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
5 Hb_001546_100 0.0119375618 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
6 Hb_014109_030 0.028712702 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
7 Hb_000844_120 0.0314179491 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
8 Hb_003994_210 0.0320002912 - - zinc finger protein, putative [Ricinus communis]
9 Hb_004447_040 0.0334838554 - - cyclin d, putative [Ricinus communis]
10 Hb_000077_430 0.0395568511 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
11 Hb_000500_380 0.043943967 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
12 Hb_004744_030 0.0446115683 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_000212_170 0.0456762919 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
14 Hb_004019_130 0.0458128116 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
15 Hb_046150_010 0.0474714239 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
16 Hb_002186_150 0.0475048059 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
17 Hb_011846_020 0.0493040105 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
18 Hb_021622_010 0.050530748 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
19 Hb_000129_060 0.0515073617 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
20 Hb_002837_010 0.0548869621 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_012573_060 Hb_012573_060 Hb_000680_080 Hb_000680_080 Hb_012573_060--Hb_000680_080 Hb_022929_010 Hb_022929_010 Hb_012573_060--Hb_022929_010 Hb_002030_140 Hb_002030_140 Hb_012573_060--Hb_002030_140 Hb_001546_100 Hb_001546_100 Hb_012573_060--Hb_001546_100 Hb_014109_030 Hb_014109_030 Hb_012573_060--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_012573_060--Hb_000844_120 Hb_000680_080--Hb_022929_010 Hb_000680_080--Hb_002030_140 Hb_000680_080--Hb_001546_100 Hb_000680_080--Hb_014109_030 Hb_000680_080--Hb_000844_120 Hb_022929_010--Hb_002030_140 Hb_022929_010--Hb_001546_100 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_002030_140--Hb_001546_100 Hb_002030_140--Hb_014109_030 Hb_002030_140--Hb_000844_120 Hb_004019_130 Hb_004019_130 Hb_001546_100--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_014109_030--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_014109_030--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_014109_030--Hb_004447_040 Hb_000500_380 Hb_000500_380 Hb_014109_030--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_014109_030--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_014109_030--Hb_046150_010 Hb_000844_120--Hb_003994_210 Hb_000844_120--Hb_004447_040 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_000844_120--Hb_046150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.465964 0.0329772 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis