Hb_000680_080

Information

Type -
Description -
Location Contig680: 56929-63943
Sequence    

Annotation

kegg
ID rcu:RCOM_0312000
description glucose-methanol-choline (gmc) oxidoreductase, putative (EC:4.1.2.10)
nr
ID XP_012068981.1
description PREDICTED: protein HOTHEAD [Jatropha curcas]
swissprot
ID Q9S746
description Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
trembl
ID A0A067KX59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24770 PE=3 SV=1
Gene Ontology
ID GO:0005576
description protein hothead

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53745: 56803-63945 , PASA_asmbl_53746: 62990-63100 , PASA_asmbl_53747: 63244-63404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_080 0.0 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
2 Hb_022929_010 0.0004921834 - - zinc/iron transporter, putative [Ricinus communis]
3 Hb_002030_140 0.0019411208 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
4 Hb_012573_060 0.0039271415 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
5 Hb_001546_100 0.008011392 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
6 Hb_014109_030 0.032631459 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
7 Hb_000844_120 0.035335238 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
8 Hb_003994_210 0.0359172502 - - zinc finger protein, putative [Ricinus communis]
9 Hb_004447_040 0.0373999526 - - cyclin d, putative [Ricinus communis]
10 Hb_000077_430 0.0390926885 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
11 Hb_004019_130 0.0419074358 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
12 Hb_000212_170 0.0451890019 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
13 Hb_000129_060 0.0476085468 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
14 Hb_000500_380 0.0478531421 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
15 Hb_004744_030 0.0485202533 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_046150_010 0.0513779474 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
17 Hb_002186_150 0.0514113036 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_021622_010 0.0530281564 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
19 Hb_011846_020 0.0532090966 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
20 Hb_162008_040 0.0579989662 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]

Gene co-expression network

sample Hb_000680_080 Hb_000680_080 Hb_022929_010 Hb_022929_010 Hb_000680_080--Hb_022929_010 Hb_002030_140 Hb_002030_140 Hb_000680_080--Hb_002030_140 Hb_012573_060 Hb_012573_060 Hb_000680_080--Hb_012573_060 Hb_001546_100 Hb_001546_100 Hb_000680_080--Hb_001546_100 Hb_014109_030 Hb_014109_030 Hb_000680_080--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_000680_080--Hb_000844_120 Hb_022929_010--Hb_002030_140 Hb_022929_010--Hb_012573_060 Hb_022929_010--Hb_001546_100 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_002030_140--Hb_012573_060 Hb_002030_140--Hb_001546_100 Hb_002030_140--Hb_014109_030 Hb_002030_140--Hb_000844_120 Hb_012573_060--Hb_001546_100 Hb_012573_060--Hb_014109_030 Hb_012573_060--Hb_000844_120 Hb_004019_130 Hb_004019_130 Hb_001546_100--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_014109_030--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_014109_030--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_014109_030--Hb_004447_040 Hb_000500_380 Hb_000500_380 Hb_014109_030--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_014109_030--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_014109_030--Hb_046150_010 Hb_000844_120--Hb_003994_210 Hb_000844_120--Hb_004447_040 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_000844_120--Hb_046150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 38.694 2.63759 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis