Hb_000077_430

Information

Type -
Description -
Location Contig77: 324719-325261
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13390g
description hypothetical protein
nr
ID XP_006371584.1
description hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
swissprot
ID Q8S8I4
description Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1
trembl
ID B9N2A9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13390g PE=4 SV=1
Gene Ontology
ID GO:0007275
description protein epidermal patterning factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57629: 324694-325420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_430 0.0 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
2 Hb_002030_140 0.0390072581 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
3 Hb_022929_010 0.0390619318 - - zinc/iron transporter, putative [Ricinus communis]
4 Hb_000680_080 0.0390926885 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
5 Hb_001546_100 0.0393606637 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
6 Hb_012573_060 0.0395568511 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
7 Hb_014109_030 0.0525950933 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
8 Hb_000844_120 0.0544437344 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
9 Hb_003994_210 0.0548509037 - - zinc finger protein, putative [Ricinus communis]
10 Hb_004019_130 0.0552964487 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
11 Hb_004447_040 0.0559020862 - - cyclin d, putative [Ricinus communis]
12 Hb_171646_010 0.0591290799 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
13 Hb_000129_060 0.05947456 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
14 Hb_000212_170 0.0595485334 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
15 Hb_029879_040 0.0631618504 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
16 Hb_000500_380 0.063798192 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
17 Hb_004744_030 0.0643266936 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
18 Hb_046150_010 0.0666185353 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
19 Hb_002186_150 0.0666455424 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
20 Hb_021622_010 0.0672466261 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]

Gene co-expression network

sample Hb_000077_430 Hb_000077_430 Hb_002030_140 Hb_002030_140 Hb_000077_430--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_000077_430--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000077_430--Hb_000680_080 Hb_001546_100 Hb_001546_100 Hb_000077_430--Hb_001546_100 Hb_012573_060 Hb_012573_060 Hb_000077_430--Hb_012573_060 Hb_014109_030 Hb_014109_030 Hb_000077_430--Hb_014109_030 Hb_002030_140--Hb_022929_010 Hb_002030_140--Hb_000680_080 Hb_002030_140--Hb_012573_060 Hb_002030_140--Hb_001546_100 Hb_002030_140--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_002030_140--Hb_000844_120 Hb_022929_010--Hb_000680_080 Hb_022929_010--Hb_012573_060 Hb_022929_010--Hb_001546_100 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_000680_080--Hb_012573_060 Hb_000680_080--Hb_001546_100 Hb_000680_080--Hb_014109_030 Hb_000680_080--Hb_000844_120 Hb_001546_100--Hb_012573_060 Hb_004019_130 Hb_004019_130 Hb_001546_100--Hb_004019_130 Hb_012573_060--Hb_014109_030 Hb_012573_060--Hb_000844_120 Hb_014109_030--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_014109_030--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_014109_030--Hb_004447_040 Hb_000500_380 Hb_000500_380 Hb_014109_030--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_014109_030--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_014109_030--Hb_046150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 34.2711 2.27596 0 0.111393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis