Hb_001546_100

Information

Type transcription factor
Description TF Family: AP2
Location Contig1546: 83046-86285
Sequence    

Annotation

kegg
ID rcu:RCOM_0652810
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID KDP40705.1
description hypothetical protein JCGZ_24704 [Jatropha curcas]
swissprot
ID Q1PFE1
description AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1
trembl
ID A0A067L8B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24704 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor ail1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13398: 84988-86091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_100 0.0 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
2 Hb_002030_140 0.0060705201 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
3 Hb_022929_010 0.0075192864 - - zinc/iron transporter, putative [Ricinus communis]
4 Hb_000680_080 0.008011392 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
5 Hb_012573_060 0.0119375618 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
6 Hb_004019_130 0.0339303072 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
7 Hb_000077_430 0.0393606637 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
8 Hb_000129_060 0.0396435153 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
9 Hb_014109_030 0.0406177672 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
10 Hb_000844_120 0.0433179053 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
11 Hb_003994_210 0.0438991063 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000212_170 0.0452455689 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
13 Hb_004447_040 0.0453796983 - - cyclin d, putative [Ricinus communis]
14 Hb_000500_380 0.055816314 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
15 Hb_162008_030 0.056466509 - - cytochrome p450 [Ageratina adenophora]
16 Hb_004744_030 0.056482271 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
17 Hb_162008_040 0.0565887513 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
18 Hb_021622_010 0.058599497 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
19 Hb_121680_010 0.0592834536 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
20 Hb_046150_010 0.0593348959 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_001546_100 Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_001546_100--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_001546_100--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_001546_100--Hb_000680_080 Hb_012573_060 Hb_012573_060 Hb_001546_100--Hb_012573_060 Hb_004019_130 Hb_004019_130 Hb_001546_100--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_002030_140--Hb_022929_010 Hb_002030_140--Hb_000680_080 Hb_002030_140--Hb_012573_060 Hb_014109_030 Hb_014109_030 Hb_002030_140--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_002030_140--Hb_000844_120 Hb_022929_010--Hb_000680_080 Hb_022929_010--Hb_012573_060 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_000680_080--Hb_012573_060 Hb_000680_080--Hb_014109_030 Hb_000680_080--Hb_000844_120 Hb_012573_060--Hb_014109_030 Hb_012573_060--Hb_000844_120 Hb_000129_060 Hb_000129_060 Hb_004019_130--Hb_000129_060 Hb_162008_030 Hb_162008_030 Hb_004019_130--Hb_162008_030 Hb_004019_130--Hb_002030_140 Hb_004019_130--Hb_022929_010 Hb_029879_040 Hb_029879_040 Hb_004019_130--Hb_029879_040 Hb_000077_430--Hb_002030_140 Hb_000077_430--Hb_022929_010 Hb_000077_430--Hb_000680_080 Hb_000077_430--Hb_012573_060 Hb_000077_430--Hb_014109_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.460982 0.02905 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis