Hb_029879_040

Information

Type -
Description -
Location Contig29879: 39590-42674
Sequence    

Annotation

kegg
ID pop:POPTR_0004s01840g
description POPTRDRAFT_555353; cytochrome P450 family protein
nr
ID XP_012091382.1
description PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
swissprot
ID O48928
description Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1
trembl
ID A0A067JAE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21247 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cytochrome p450 77a4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31226: 41150-41494 , PASA_asmbl_31227: 41619-41762 , PASA_asmbl_31228: 41769-41903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_040 0.0 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
2 Hb_162008_030 0.0340507323 - - cytochrome p450 [Ageratina adenophora]
3 Hb_000129_060 0.038595812 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
4 Hb_149407_010 0.0412091089 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
5 Hb_004019_130 0.0416054276 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
6 Hb_002028_230 0.0517850235 - - Pectinesterase-3 precursor, putative [Ricinus communis]
7 Hb_000077_430 0.0631618504 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
8 Hb_121680_010 0.0666231024 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
9 Hb_001546_100 0.066959969 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
10 Hb_002030_140 0.0721858425 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
11 Hb_022929_010 0.0734489759 - - zinc/iron transporter, putative [Ricinus communis]
12 Hb_078641_020 0.0737677446 - - Pectinesterase-2 precursor, putative [Ricinus communis]
13 Hb_000680_080 0.0738792834 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
14 Hb_003411_080 0.0744636493 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012573_060 0.077333579 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
16 Hb_162008_040 0.0835141058 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
17 Hb_000212_170 0.0837419852 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
18 Hb_000753_220 0.0849734557 - - hypothetical protein RCOM_1467930 [Ricinus communis]
19 Hb_003398_110 0.0872296113 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
20 Hb_162008_020 0.0934581794 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_029879_040 Hb_029879_040 Hb_162008_030 Hb_162008_030 Hb_029879_040--Hb_162008_030 Hb_000129_060 Hb_000129_060 Hb_029879_040--Hb_000129_060 Hb_149407_010 Hb_149407_010 Hb_029879_040--Hb_149407_010 Hb_004019_130 Hb_004019_130 Hb_029879_040--Hb_004019_130 Hb_002028_230 Hb_002028_230 Hb_029879_040--Hb_002028_230 Hb_000077_430 Hb_000077_430 Hb_029879_040--Hb_000077_430 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_162008_030--Hb_149407_010 Hb_162008_030--Hb_002028_230 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100 Hb_000129_060--Hb_004019_130 Hb_000129_060--Hb_001546_100 Hb_000129_060--Hb_002028_230 Hb_000129_060--Hb_149407_010 Hb_149407_010--Hb_004019_130 Hb_149407_010--Hb_002028_230 Hb_003411_080 Hb_003411_080 Hb_149407_010--Hb_003411_080 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_002028_230--Hb_003411_080 Hb_002028_230--Hb_004019_130 Hb_000077_430--Hb_002030_140 Hb_000077_430--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000077_430--Hb_000680_080 Hb_000077_430--Hb_001546_100 Hb_012573_060 Hb_012573_060 Hb_000077_430--Hb_012573_060 Hb_014109_030 Hb_014109_030 Hb_000077_430--Hb_014109_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 9.62204 0.310425 0 0.0230352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis