Hb_002028_230

Information

Type -
Description -
Location Contig2028: 243413-246767
Sequence    

Annotation

kegg
ID rcu:RCOM_0708310
description Pectinesterase-3 precursor, putative (EC:3.1.1.11)
nr
ID XP_002516186.1
description Pectinesterase-3 precursor, putative [Ricinus communis]
swissprot
ID P83948
description Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1
trembl
ID B9RR17
description Pectinesterase OS=Ricinus communis GN=RCOM_0708310 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectin methylesterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_230 0.0 - - Pectinesterase-3 precursor, putative [Ricinus communis]
2 Hb_162008_030 0.0388544315 - - cytochrome p450 [Ageratina adenophora]
3 Hb_003411_080 0.0397865046 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000129_060 0.0399187481 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
5 Hb_004019_130 0.0418559004 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
6 Hb_149407_010 0.0490147347 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
7 Hb_029879_040 0.0517850235 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
8 Hb_001546_100 0.0634181094 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
9 Hb_121680_010 0.0645566846 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
10 Hb_002030_140 0.0682988695 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
11 Hb_022929_010 0.0694886959 - - zinc/iron transporter, putative [Ricinus communis]
12 Hb_000680_080 0.0698948237 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
13 Hb_162008_040 0.0717059677 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
14 Hb_012573_060 0.0731684328 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
15 Hb_005854_060 0.0738209518 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_078641_020 0.0758705745 - - Pectinesterase-2 precursor, putative [Ricinus communis]
17 Hb_000077_430 0.0780696654 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
18 Hb_007218_010 0.0789754486 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
19 Hb_000212_170 0.0805687652 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
20 Hb_007157_050 0.0849575901 - - hypothetical protein RCOM_0711500 [Ricinus communis]

Gene co-expression network

sample Hb_002028_230 Hb_002028_230 Hb_162008_030 Hb_162008_030 Hb_002028_230--Hb_162008_030 Hb_003411_080 Hb_003411_080 Hb_002028_230--Hb_003411_080 Hb_000129_060 Hb_000129_060 Hb_002028_230--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_002028_230--Hb_004019_130 Hb_149407_010 Hb_149407_010 Hb_002028_230--Hb_149407_010 Hb_029879_040 Hb_029879_040 Hb_002028_230--Hb_029879_040 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_162008_030--Hb_149407_010 Hb_162008_030--Hb_029879_040 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100 Hb_000206_080 Hb_000206_080 Hb_003411_080--Hb_000206_080 Hb_003411_080--Hb_149407_010 Hb_003411_080--Hb_162008_030 Hb_003411_080--Hb_000129_060 Hb_003411_080--Hb_029879_040 Hb_000129_060--Hb_004019_130 Hb_000129_060--Hb_029879_040 Hb_000129_060--Hb_001546_100 Hb_000129_060--Hb_149407_010 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_004019_130--Hb_029879_040 Hb_149407_010--Hb_029879_040 Hb_149407_010--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_029879_040--Hb_000077_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00871942 2.85179 0.101296 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis