Hb_000206_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig206: 151745-152693
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14130g
description POPTRDRAFT_574574; hypothetical protein
nr
ID XP_012087685.1
description PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JXL7
description MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_080 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
2 Hb_136620_010 0.024558805 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
3 Hb_003411_080 0.0533837999 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002028_230 0.0865543326 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_149407_010 0.1082604749 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
6 Hb_162008_030 0.1111337005 - - cytochrome p450 [Ageratina adenophora]
7 Hb_005854_060 0.1158240012 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_029879_040 0.1158770389 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
9 Hb_000129_060 0.1160751414 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
10 Hb_004019_130 0.1182287106 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
11 Hb_007157_050 0.1212097687 - - hypothetical protein RCOM_0711500 [Ricinus communis]
12 Hb_007218_010 0.1252653123 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
13 Hb_003147_020 0.1273927596 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
14 Hb_121680_010 0.1281539953 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
15 Hb_078641_020 0.1291284031 - - Pectinesterase-2 precursor, putative [Ricinus communis]
16 Hb_001680_060 0.1311701096 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001433_120 0.1314703728 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
18 Hb_162008_040 0.133211762 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
19 Hb_008453_120 0.134376251 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
20 Hb_001546_100 0.1350039854 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_080 Hb_000206_080 Hb_136620_010 Hb_136620_010 Hb_000206_080--Hb_136620_010 Hb_003411_080 Hb_003411_080 Hb_000206_080--Hb_003411_080 Hb_002028_230 Hb_002028_230 Hb_000206_080--Hb_002028_230 Hb_149407_010 Hb_149407_010 Hb_000206_080--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_000206_080--Hb_162008_030 Hb_005854_060 Hb_005854_060 Hb_000206_080--Hb_005854_060 Hb_136620_010--Hb_003411_080 Hb_136620_010--Hb_002028_230 Hb_136620_010--Hb_005854_060 Hb_001433_120 Hb_001433_120 Hb_136620_010--Hb_001433_120 Hb_136620_010--Hb_149407_010 Hb_003411_080--Hb_002028_230 Hb_003411_080--Hb_149407_010 Hb_003411_080--Hb_162008_030 Hb_000129_060 Hb_000129_060 Hb_003411_080--Hb_000129_060 Hb_029879_040 Hb_029879_040 Hb_003411_080--Hb_029879_040 Hb_002028_230--Hb_162008_030 Hb_002028_230--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_002028_230--Hb_004019_130 Hb_002028_230--Hb_149407_010 Hb_002028_230--Hb_029879_040 Hb_149407_010--Hb_162008_030 Hb_149407_010--Hb_029879_040 Hb_149407_010--Hb_000129_060 Hb_149407_010--Hb_004019_130 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_162008_030--Hb_029879_040 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100 Hb_001680_060 Hb_001680_060 Hb_005854_060--Hb_001680_060 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_162008_040 Hb_162008_040 Hb_005854_060--Hb_162008_040 Hb_007218_010 Hb_007218_010 Hb_005854_060--Hb_007218_010 Hb_000212_170 Hb_000212_170 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.103177 4.23994 0.0960629 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis