Hb_001433_120

Information

Type -
Description -
Location Contig1433: 116658-123320
Sequence    

Annotation

kegg
ID cic:CICLE_v10003574mg
description hypothetical protein
nr
ID XP_006433472.1
description hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
swissprot
ID O80494
description F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2
trembl
ID V4T0U4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003574mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_120 0.0 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
2 Hb_000165_270 0.093563032 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
3 Hb_007218_010 0.1158361518 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
4 Hb_005854_060 0.1179765827 - - short-chain dehydrogenase, putative [Ricinus communis]
5 Hb_007157_050 0.1182727189 - - hypothetical protein RCOM_0711500 [Ricinus communis]
6 Hb_001680_060 0.1204545189 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002447_060 0.1262612498 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
8 Hb_136620_010 0.1285558028 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
9 Hb_000206_080 0.1314703728 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
10 Hb_001040_050 0.1346025147 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_001519_080 0.1347722293 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_002079_100 0.135527851 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
13 Hb_000505_030 0.1359545576 - - conserved hypothetical protein [Ricinus communis]
14 Hb_021622_010 0.1412406444 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
15 Hb_012633_010 0.1431990811 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
16 Hb_171646_010 0.143418694 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
17 Hb_162008_040 0.14543673 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
18 Hb_003411_080 0.1461046074 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008453_120 0.1463682973 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
20 Hb_004881_040 0.1463903663 - - PREDICTED: protodermal factor 1-like [Populus euphratica]

Gene co-expression network

sample Hb_001433_120 Hb_001433_120 Hb_000165_270 Hb_000165_270 Hb_001433_120--Hb_000165_270 Hb_007218_010 Hb_007218_010 Hb_001433_120--Hb_007218_010 Hb_005854_060 Hb_005854_060 Hb_001433_120--Hb_005854_060 Hb_007157_050 Hb_007157_050 Hb_001433_120--Hb_007157_050 Hb_001680_060 Hb_001680_060 Hb_001433_120--Hb_001680_060 Hb_002447_060 Hb_002447_060 Hb_001433_120--Hb_002447_060 Hb_000165_270--Hb_007218_010 Hb_010672_040 Hb_010672_040 Hb_000165_270--Hb_010672_040 Hb_000165_270--Hb_007157_050 Hb_000347_160 Hb_000347_160 Hb_000165_270--Hb_000347_160 Hb_000165_270--Hb_005854_060 Hb_007218_010--Hb_005854_060 Hb_162008_040 Hb_162008_040 Hb_007218_010--Hb_162008_040 Hb_007218_010--Hb_007157_050 Hb_121680_010 Hb_121680_010 Hb_007218_010--Hb_121680_010 Hb_001546_100 Hb_001546_100 Hb_007218_010--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_007218_010--Hb_002030_140 Hb_005854_060--Hb_001680_060 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_005854_060--Hb_162008_040 Hb_000212_170 Hb_000212_170 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060 Hb_004881_040 Hb_004881_040 Hb_007157_050--Hb_004881_040 Hb_007157_050--Hb_121680_010 Hb_007157_050--Hb_001680_060 Hb_162008_020 Hb_162008_020 Hb_007157_050--Hb_162008_020 Hb_007157_050--Hb_162008_040 Hb_007157_050--Hb_005854_060 Hb_008252_010 Hb_008252_010 Hb_001680_060--Hb_008252_010 Hb_001680_060--Hb_162008_040 Hb_002376_020 Hb_002376_020 Hb_001680_060--Hb_002376_020 Hb_001680_060--Hb_162008_020 Hb_002079_100 Hb_002079_100 Hb_002447_060--Hb_002079_100 Hb_012633_010 Hb_012633_010 Hb_002447_060--Hb_012633_010 Hb_001040_050 Hb_001040_050 Hb_002447_060--Hb_001040_050 Hb_000157_060 Hb_000157_060 Hb_002447_060--Hb_000157_060 Hb_028187_010 Hb_028187_010 Hb_002447_060--Hb_028187_010 Hb_000505_030 Hb_000505_030 Hb_002447_060--Hb_000505_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0202171 0.293896 8.67916 0.589744 0 0.0265417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0229762 0.0361564 0 0.0359671 0.0381875

CAGE analysis