Hb_000347_160

Information

Type transcription factor
Description TF Family: Tify
Location Contig347: 183548-185473
Sequence    

Annotation

kegg
ID rcu:RCOM_0684970
description hypothetical protein
nr
ID AIY25007.1
description JAZ2 [Hevea brasiliensis]
swissprot
ID Q9LMA8
description Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1
trembl
ID A0A0B4RUR8
description JAZ2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36199: 183343-185454 , PASA_asmbl_36200: 183661-183915 , PASA_asmbl_36201: 184311-184672
cDNA
(Sanger)
(ID:Location)		 022_N11.ab1: 184068-185381 , 044_M01.ab1: 183659-185381 , 051_G24.ab1: 183662-185381

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_160 0.0 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
2 Hb_001040_050 0.1100131772 - - Stem-specific protein TSJT1, putative [Ricinus communis]
3 Hb_005649_050 0.1158534799 - - conserved hypothetical protein [Ricinus communis]
4 Hb_087793_010 0.1191096714 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002078_310 0.1205326921 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
6 Hb_006788_130 0.1338570762 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
7 Hb_114292_010 0.1377418297 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004800_030 0.1387856929 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
9 Hb_000157_060 0.1404991121 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
10 Hb_000115_190 0.1418314607 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
11 Hb_001235_040 0.1431656464 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
12 Hb_002837_030 0.1442083425 - - conserved hypothetical protein [Ricinus communis]
13 Hb_074660_010 0.1450249804 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_000084_230 0.1475774749 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
15 Hb_000142_030 0.148946768 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_001564_100 0.1490693552 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
17 Hb_000165_270 0.1496517535 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
18 Hb_001433_120 0.1498591169 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
19 Hb_000739_250 0.1517071439 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
20 Hb_007632_200 0.1520834525 - - hypothetical protein L484_018221 [Morus notabilis]

Gene co-expression network

sample Hb_000347_160 Hb_000347_160 Hb_001040_050 Hb_001040_050 Hb_000347_160--Hb_001040_050 Hb_005649_050 Hb_005649_050 Hb_000347_160--Hb_005649_050 Hb_087793_010 Hb_087793_010 Hb_000347_160--Hb_087793_010 Hb_002078_310 Hb_002078_310 Hb_000347_160--Hb_002078_310 Hb_006788_130 Hb_006788_130 Hb_000347_160--Hb_006788_130 Hb_114292_010 Hb_114292_010 Hb_000347_160--Hb_114292_010 Hb_002447_060 Hb_002447_060 Hb_001040_050--Hb_002447_060 Hb_000115_190 Hb_000115_190 Hb_001040_050--Hb_000115_190 Hb_006519_020 Hb_006519_020 Hb_001040_050--Hb_006519_020 Hb_002079_100 Hb_002079_100 Hb_001040_050--Hb_002079_100 Hb_012633_010 Hb_012633_010 Hb_001040_050--Hb_012633_010 Hb_002473_030 Hb_002473_030 Hb_005649_050--Hb_002473_030 Hb_004963_020 Hb_004963_020 Hb_005649_050--Hb_004963_020 Hb_002197_010 Hb_002197_010 Hb_005649_050--Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_005649_050--Hb_001210_030 Hb_002837_030 Hb_002837_030 Hb_005649_050--Hb_002837_030 Hb_162378_020 Hb_162378_020 Hb_005649_050--Hb_162378_020 Hb_032011_020 Hb_032011_020 Hb_087793_010--Hb_032011_020 Hb_023558_010 Hb_023558_010 Hb_087793_010--Hb_023558_010 Hb_169136_010 Hb_169136_010 Hb_087793_010--Hb_169136_010 Hb_002837_120 Hb_002837_120 Hb_087793_010--Hb_002837_120 Hb_087793_010--Hb_006788_130 Hb_011859_010 Hb_011859_010 Hb_002078_310--Hb_011859_010 Hb_001699_090 Hb_001699_090 Hb_002078_310--Hb_001699_090 Hb_001564_100 Hb_001564_100 Hb_002078_310--Hb_001564_100 Hb_006332_030 Hb_006332_030 Hb_002078_310--Hb_006332_030 Hb_011218_020 Hb_011218_020 Hb_002078_310--Hb_011218_020 Hb_002078_310--Hb_005649_050 Hb_000084_230 Hb_000084_230 Hb_006788_130--Hb_000084_230 Hb_006788_130--Hb_001564_100 Hb_001235_040 Hb_001235_040 Hb_006788_130--Hb_001235_040 Hb_001220_020 Hb_001220_020 Hb_006788_130--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_006788_130--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_006788_130--Hb_003018_210 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_000142_030 Hb_000142_030 Hb_114292_010--Hb_000142_030 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_114292_010--Hb_000115_190 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218312 22.7326 683.932 115.217 0 0.187459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49974 15.7667 1.44845 15.7601 5.2324

CAGE analysis