Hb_114292_010

Information

Type -
Description -
Location Contig114292: 1811-2068
Sequence    

Annotation

kegg
ID rcu:RCOM_0145330
description hypothetical protein
nr
ID XP_002533928.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6Q9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04319: 1669-2124
cDNA
(Sanger)
(ID:Location)		 007_D18.ab1: 1684-2124 , 036_P13.ab1: 1682-1887

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114292_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001935_040 0.1102376854 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
3 Hb_000142_030 0.1270341287 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_002218_050 0.1319305757 - - SSXT family protein isoform 2, partial [Theobroma cacao]
5 Hb_000115_190 0.1372626736 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
6 Hb_000347_160 0.1377418297 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
7 Hb_000367_240 0.1435929492 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
8 Hb_004586_310 0.1438721164 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003599_060 0.1491598969 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_001040_050 0.1541490704 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_001277_120 0.1563616944 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
12 Hb_001143_200 0.165669467 transcription factor TF Family: NAC NAC domain protein [Glycine max]
13 Hb_002221_010 0.1675667457 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
14 Hb_011360_130 0.1679420813 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000388_040 0.1680799053 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
16 Hb_005162_120 0.1683249385 - - ferric reductase oxidase [Manihot esculenta]
17 Hb_001279_050 0.1705957372 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
18 Hb_002307_040 0.1719733934 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000748_100 0.1735296596 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
20 Hb_000028_250 0.1759986804 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_114292_010 Hb_114292_010 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_000142_030 Hb_000142_030 Hb_114292_010--Hb_000142_030 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_000115_190 Hb_000115_190 Hb_114292_010--Hb_000115_190 Hb_000347_160 Hb_000347_160 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_001935_040--Hb_000115_190 Hb_001935_040--Hb_000142_030 Hb_001935_040--Hb_000347_160 Hb_000157_060 Hb_000157_060 Hb_001935_040--Hb_000157_060 Hb_003599_060 Hb_003599_060 Hb_001935_040--Hb_003599_060 Hb_000142_030--Hb_003599_060 Hb_007441_290 Hb_007441_290 Hb_000142_030--Hb_007441_290 Hb_012753_150 Hb_012753_150 Hb_000142_030--Hb_012753_150 Hb_001277_120 Hb_001277_120 Hb_000142_030--Hb_001277_120 Hb_001143_200 Hb_001143_200 Hb_000142_030--Hb_001143_200 Hb_000388_040 Hb_000388_040 Hb_002218_050--Hb_000388_040 Hb_001040_050 Hb_001040_050 Hb_002218_050--Hb_001040_050 Hb_005162_120 Hb_005162_120 Hb_002218_050--Hb_005162_120 Hb_002218_050--Hb_001143_200 Hb_002218_050--Hb_000115_190 Hb_000115_190--Hb_001040_050 Hb_000028_250 Hb_000028_250 Hb_000115_190--Hb_000028_250 Hb_006519_020 Hb_006519_020 Hb_000115_190--Hb_006519_020 Hb_002447_060 Hb_002447_060 Hb_000115_190--Hb_002447_060 Hb_000115_190--Hb_000388_040 Hb_000115_190--Hb_005162_120 Hb_000347_160--Hb_001040_050 Hb_005649_050 Hb_005649_050 Hb_000347_160--Hb_005649_050 Hb_087793_010 Hb_087793_010 Hb_000347_160--Hb_087793_010 Hb_002078_310 Hb_002078_310 Hb_000347_160--Hb_002078_310 Hb_006788_130 Hb_006788_130 Hb_000347_160--Hb_006788_130 Hb_011360_130 Hb_011360_130 Hb_000367_240--Hb_011360_130 Hb_000748_100 Hb_000748_100 Hb_000367_240--Hb_000748_100 Hb_001279_050 Hb_001279_050 Hb_000367_240--Hb_001279_050 Hb_001454_180 Hb_001454_180 Hb_000367_240--Hb_001454_180 Hb_000367_240--Hb_000347_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.134 137.935 1808.2 294.314 7.02804 11.7074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1216 79.6107 11.1079 28.2332 23.2315

CAGE analysis