Hb_001279_050

Information

Type -
Description -
Location Contig1279: 51928-65917
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36210g
description POPTRDRAFT_840932; hypothetical protein
nr
ID XP_012071253.1
description PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
swissprot
ID B9SLR1
description UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0530710 PE=3 SV=1
trembl
ID B9GIZ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s36210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08576: 51709-58595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_050 0.0 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
2 Hb_028487_120 0.119922848 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
3 Hb_000748_100 0.1209098598 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
4 Hb_002307_040 0.1387491967 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000367_240 0.1432367167 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
6 Hb_000069_400 0.1535668966 - - RING-H2 finger protein ATL3K, putative [Ricinus communis]
7 Hb_002221_010 0.1616387347 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
8 Hb_011360_130 0.1627503693 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008406_100 0.1653040384 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
10 Hb_001454_180 0.1687648091 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
11 Hb_002218_050 0.1693303666 - - SSXT family protein isoform 2, partial [Theobroma cacao]
12 Hb_000083_110 0.1693720616 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
13 Hb_114292_010 0.1705957372 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002837_030 0.1744903781 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001761_010 0.1786344401 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
16 Hb_000960_120 0.1791253072 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
17 Hb_004963_020 0.1834066376 - - PREDICTED: patellin-4 [Populus euphratica]
18 Hb_002693_040 0.1840802246 - - hypersensitive-induced response protein [Carica papaya]
19 Hb_005649_050 0.1863446735 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002473_030 0.186670113 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_050 Hb_001279_050 Hb_028487_120 Hb_028487_120 Hb_001279_050--Hb_028487_120 Hb_000748_100 Hb_000748_100 Hb_001279_050--Hb_000748_100 Hb_002307_040 Hb_002307_040 Hb_001279_050--Hb_002307_040 Hb_000367_240 Hb_000367_240 Hb_001279_050--Hb_000367_240 Hb_000069_400 Hb_000069_400 Hb_001279_050--Hb_000069_400 Hb_002221_010 Hb_002221_010 Hb_001279_050--Hb_002221_010 Hb_008406_100 Hb_008406_100 Hb_028487_120--Hb_008406_100 Hb_022092_040 Hb_022092_040 Hb_028487_120--Hb_022092_040 Hb_000638_260 Hb_000638_260 Hb_028487_120--Hb_000638_260 Hb_000960_120 Hb_000960_120 Hb_028487_120--Hb_000960_120 Hb_024973_020 Hb_024973_020 Hb_028487_120--Hb_024973_020 Hb_004800_030 Hb_004800_030 Hb_000748_100--Hb_004800_030 Hb_002473_030 Hb_002473_030 Hb_000748_100--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_000748_100--Hb_005649_050 Hb_001454_180 Hb_001454_180 Hb_000748_100--Hb_001454_180 Hb_004963_020 Hb_004963_020 Hb_000748_100--Hb_004963_020 Hb_005686_100 Hb_005686_100 Hb_002307_040--Hb_005686_100 Hb_002307_040--Hb_000748_100 Hb_001433_120 Hb_001433_120 Hb_002307_040--Hb_001433_120 Hb_002307_040--Hb_000069_400 Hb_002307_040--Hb_002221_010 Hb_011360_130 Hb_011360_130 Hb_000367_240--Hb_011360_130 Hb_000367_240--Hb_000748_100 Hb_114292_010 Hb_114292_010 Hb_000367_240--Hb_114292_010 Hb_000367_240--Hb_001454_180 Hb_000347_160 Hb_000347_160 Hb_000367_240--Hb_000347_160 Hb_004449_160 Hb_004449_160 Hb_000069_400--Hb_004449_160 Hb_007120_020 Hb_007120_020 Hb_000069_400--Hb_007120_020 Hb_000069_400--Hb_000748_100 Hb_171646_010 Hb_171646_010 Hb_000069_400--Hb_171646_010 Hb_000115_190 Hb_000115_190 Hb_002221_010--Hb_000115_190 Hb_002693_040 Hb_002693_040 Hb_002221_010--Hb_002693_040 Hb_005162_120 Hb_005162_120 Hb_002221_010--Hb_005162_120 Hb_002218_050 Hb_002218_050 Hb_002221_010--Hb_002218_050 Hb_002221_010--Hb_114292_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34499 0.6439 27.2853 3.6314 0.692551 0.312025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.247143 0.13891 0.264819 0.551612 0.590549

CAGE analysis