Hb_007120_020

Information

Type -
Description -
Location Contig7120: 17714-18607
Sequence    

Annotation

kegg
ID rcu:RCOM_0606770
description hypothetical protein
nr
ID XP_002530972.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LQQ0
description Dirigent protein 25 OS=Arabidopsis thaliana GN=DIR25 PE=2 SV=1
trembl
ID B9SYA3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0606770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55331: 16015-16771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007120_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001952_100 0.1178263325 - - PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
3 Hb_000763_030 0.1318397565 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
4 Hb_000227_010 0.1442428659 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
5 Hb_004722_050 0.1492948114 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
6 Hb_001926_050 0.1494171525 - - PREDICTED: peroxidase 19 [Jatropha curcas]
7 Hb_000514_010 0.1498937823 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
8 Hb_004117_070 0.149986417 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
9 Hb_001171_020 0.1504781973 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
10 Hb_001372_010 0.1508877838 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_004598_010 0.1509355489 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
12 Hb_182291_010 0.151119836 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
13 Hb_002049_040 0.1512890829 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
14 Hb_006953_010 0.1516384011 - - cytochrome P450, putative [Ricinus communis]
15 Hb_030385_030 0.1516552365 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
16 Hb_107495_020 0.1521516349 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
17 Hb_011179_010 0.1522894814 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
18 Hb_001536_070 0.1522957497 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
19 Hb_000265_040 0.1523184138 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
20 Hb_075653_010 0.153157792 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007120_020 Hb_007120_020 Hb_001952_100 Hb_001952_100 Hb_007120_020--Hb_001952_100 Hb_000763_030 Hb_000763_030 Hb_007120_020--Hb_000763_030 Hb_000227_010 Hb_000227_010 Hb_007120_020--Hb_000227_010 Hb_004722_050 Hb_004722_050 Hb_007120_020--Hb_004722_050 Hb_001926_050 Hb_001926_050 Hb_007120_020--Hb_001926_050 Hb_000514_010 Hb_000514_010 Hb_007120_020--Hb_000514_010 Hb_000155_280 Hb_000155_280 Hb_001952_100--Hb_000155_280 Hb_006485_020 Hb_006485_020 Hb_001952_100--Hb_006485_020 Hb_017959_020 Hb_017959_020 Hb_001952_100--Hb_017959_020 Hb_002026_040 Hb_002026_040 Hb_001952_100--Hb_002026_040 Hb_002376_020 Hb_002376_020 Hb_001952_100--Hb_002376_020 Hb_002843_200 Hb_002843_200 Hb_001952_100--Hb_002843_200 Hb_001061_010 Hb_001061_010 Hb_000763_030--Hb_001061_010 Hb_000763_030--Hb_001952_100 Hb_000083_280 Hb_000083_280 Hb_000763_030--Hb_000083_280 Hb_006332_030 Hb_006332_030 Hb_000763_030--Hb_006332_030 Hb_113974_010 Hb_113974_010 Hb_000763_030--Hb_113974_010 Hb_002585_050 Hb_002585_050 Hb_000227_010--Hb_002585_050 Hb_000592_150 Hb_000592_150 Hb_000227_010--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_000227_010--Hb_004228_050 Hb_002305_040 Hb_002305_040 Hb_000227_010--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_000227_010--Hb_075653_010 Hb_007816_010 Hb_007816_010 Hb_000227_010--Hb_007816_010 Hb_004722_050--Hb_001926_050 Hb_004722_050--Hb_000514_010 Hb_001171_020 Hb_001171_020 Hb_004722_050--Hb_001171_020 Hb_004117_070 Hb_004117_070 Hb_004722_050--Hb_004117_070 Hb_001372_010 Hb_001372_010 Hb_004722_050--Hb_001372_010 Hb_004598_010 Hb_004598_010 Hb_004722_050--Hb_004598_010 Hb_001926_050--Hb_004117_070 Hb_030385_030 Hb_030385_030 Hb_001926_050--Hb_030385_030 Hb_001926_050--Hb_000514_010 Hb_011179_010 Hb_011179_010 Hb_001926_050--Hb_011179_010 Hb_001926_050--Hb_001171_020 Hb_000514_010--Hb_001171_020 Hb_000514_010--Hb_001372_010 Hb_000514_010--Hb_004598_010 Hb_182291_010 Hb_182291_010 Hb_000514_010--Hb_182291_010 Hb_002049_040 Hb_002049_040 Hb_000514_010--Hb_002049_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0318787 0 0.589695 0.105419 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis