Hb_002305_040

Information

Type -
Description -
Location Contig2305: 101842-106807
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID XP_002523474.1
description TMV resistance protein N, putative [Ricinus communis]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9SBV5
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1045150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002305_040 0.0 - - TMV resistance protein N, putative [Ricinus communis]
2 Hb_075653_010 0.000974605 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
3 Hb_000265_040 0.0049870533 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
4 Hb_001536_070 0.0051023449 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
5 Hb_004228_050 0.0056037195 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
6 Hb_107495_020 0.0058454328 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
7 Hb_000592_150 0.0065378855 - - Os05g0413200 [Oryza sativa Japonica Group]
8 Hb_006953_010 0.0086504127 - - cytochrome P450, putative [Ricinus communis]
9 Hb_002049_040 0.0107327041 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
10 Hb_182291_010 0.0118047971 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
11 Hb_004598_010 0.0130282168 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
12 Hb_001372_010 0.0133559783 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_002585_050 0.0155663296 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001171_020 0.0163885213 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
15 Hb_000514_010 0.0217971684 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
16 Hb_007816_010 0.0232997806 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
17 Hb_000227_010 0.0277978657 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
18 Hb_002837_010 0.0282186065 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
19 Hb_004722_050 0.0325851759 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
20 Hb_011846_020 0.033821239 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]

Gene co-expression network

sample Hb_002305_040 Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_002305_040--Hb_075653_010 Hb_000265_040 Hb_000265_040 Hb_002305_040--Hb_000265_040 Hb_001536_070 Hb_001536_070 Hb_002305_040--Hb_001536_070 Hb_004228_050 Hb_004228_050 Hb_002305_040--Hb_004228_050 Hb_107495_020 Hb_107495_020 Hb_002305_040--Hb_107495_020 Hb_000592_150 Hb_000592_150 Hb_002305_040--Hb_000592_150 Hb_075653_010--Hb_000265_040 Hb_075653_010--Hb_001536_070 Hb_075653_010--Hb_107495_020 Hb_075653_010--Hb_004228_050 Hb_075653_010--Hb_000592_150 Hb_000265_040--Hb_001536_070 Hb_000265_040--Hb_107495_020 Hb_006953_010 Hb_006953_010 Hb_000265_040--Hb_006953_010 Hb_002049_040 Hb_002049_040 Hb_000265_040--Hb_002049_040 Hb_001536_070--Hb_107495_020 Hb_001536_070--Hb_006953_010 Hb_001536_070--Hb_002049_040 Hb_004228_050--Hb_000592_150 Hb_002585_050 Hb_002585_050 Hb_004228_050--Hb_002585_050 Hb_004228_050--Hb_000265_040 Hb_004228_050--Hb_001536_070 Hb_107495_020--Hb_006953_010 Hb_107495_020--Hb_002049_040 Hb_000592_150--Hb_002585_050 Hb_000592_150--Hb_000265_040 Hb_000592_150--Hb_001536_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.078318 0.0109616 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis