Hb_107495_020

Information

Type -
Description -
Location Contig107495: 28411-30852
Sequence    

Annotation

kegg
ID rcu:RCOM_1029180
description zinc finger protein, putative
nr
ID XP_012077436.1
description PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
swissprot
ID Q9SF78
description GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1
trembl
ID B9SK93
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1029180 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g71691

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02315: 28160-30850 , PASA_asmbl_02316: 28868-30688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107495_020 0.0 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
2 Hb_001536_070 0.0007431152 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
3 Hb_000265_040 0.0008584103 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
4 Hb_006953_010 0.0028051531 - - cytochrome P450, putative [Ricinus communis]
5 Hb_075653_010 0.0048708623 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
6 Hb_002049_040 0.004887644 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
7 Hb_002305_040 0.0058454328 - - TMV resistance protein N, putative [Ricinus communis]
8 Hb_182291_010 0.005959863 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
9 Hb_004598_010 0.0071834455 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
10 Hb_001372_010 0.0075112541 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_001171_020 0.0105443008 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
12 Hb_004228_050 0.0114486792 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
13 Hb_000592_150 0.01238272 - - Os05g0413200 [Oryza sativa Japonica Group]
14 Hb_000514_010 0.0159541456 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
15 Hb_002585_050 0.0214092476 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004722_050 0.026745639 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
17 Hb_007816_010 0.0291399975 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
18 Hb_000227_010 0.0306105359 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
19 Hb_002837_010 0.0340565714 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
20 Hb_001926_050 0.0366756474 - - PREDICTED: peroxidase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_107495_020 Hb_107495_020 Hb_001536_070 Hb_001536_070 Hb_107495_020--Hb_001536_070 Hb_000265_040 Hb_000265_040 Hb_107495_020--Hb_000265_040 Hb_006953_010 Hb_006953_010 Hb_107495_020--Hb_006953_010 Hb_075653_010 Hb_075653_010 Hb_107495_020--Hb_075653_010 Hb_002049_040 Hb_002049_040 Hb_107495_020--Hb_002049_040 Hb_002305_040 Hb_002305_040 Hb_107495_020--Hb_002305_040 Hb_001536_070--Hb_000265_040 Hb_001536_070--Hb_006953_010 Hb_001536_070--Hb_075653_010 Hb_001536_070--Hb_002305_040 Hb_001536_070--Hb_002049_040 Hb_000265_040--Hb_006953_010 Hb_000265_040--Hb_075653_010 Hb_000265_040--Hb_002305_040 Hb_000265_040--Hb_002049_040 Hb_006953_010--Hb_002049_040 Hb_182291_010 Hb_182291_010 Hb_006953_010--Hb_182291_010 Hb_004598_010 Hb_004598_010 Hb_006953_010--Hb_004598_010 Hb_075653_010--Hb_002305_040 Hb_004228_050 Hb_004228_050 Hb_075653_010--Hb_004228_050 Hb_000592_150 Hb_000592_150 Hb_075653_010--Hb_000592_150 Hb_002049_040--Hb_182291_010 Hb_002049_040--Hb_004598_010 Hb_001372_010 Hb_001372_010 Hb_002049_040--Hb_001372_010 Hb_002305_040--Hb_004228_050 Hb_002305_040--Hb_000592_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 16.0308 2.33906 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis