Hb_001372_010

Information

Type -
Description -
Location Contig1372: 189-947
Sequence    

Annotation

kegg
ID rcu:RCOM_1577280
description ankyrin repeat-containing protein, putative
nr
ID XP_002513462.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID A5PMU4
description Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1
trembl
ID B9RI93
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1577280 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001372_010 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_004598_010 0.0003278293 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
3 Hb_182291_010 0.0015514728 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
4 Hb_002049_040 0.0026237236 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
5 Hb_001171_020 0.0030333266 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
6 Hb_006953_010 0.0047062185 - - cytochrome P450, putative [Ricinus communis]
7 Hb_107495_020 0.0075112541 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
8 Hb_001536_070 0.0082543142 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
9 Hb_000265_040 0.0083695998 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
10 Hb_000514_010 0.0084440563 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
11 Hb_075653_010 0.0123815702 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
12 Hb_002305_040 0.0133559783 - - TMV resistance protein N, putative [Ricinus communis]
13 Hb_004228_050 0.0189579384 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
14 Hb_004722_050 0.0192387294 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
15 Hb_000592_150 0.0198917053 - - Os05g0413200 [Oryza sativa Japonica Group]
16 Hb_002585_050 0.0289146822 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001926_050 0.0291732336 - - PREDICTED: peroxidase 19 [Jatropha curcas]
18 Hb_000227_010 0.035330072 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
19 Hb_007816_010 0.0366410356 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
20 Hb_004117_070 0.0371916342 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]

Gene co-expression network

sample Hb_001372_010 Hb_001372_010 Hb_004598_010 Hb_004598_010 Hb_001372_010--Hb_004598_010 Hb_182291_010 Hb_182291_010 Hb_001372_010--Hb_182291_010 Hb_002049_040 Hb_002049_040 Hb_001372_010--Hb_002049_040 Hb_001171_020 Hb_001171_020 Hb_001372_010--Hb_001171_020 Hb_006953_010 Hb_006953_010 Hb_001372_010--Hb_006953_010 Hb_107495_020 Hb_107495_020 Hb_001372_010--Hb_107495_020 Hb_004598_010--Hb_182291_010 Hb_004598_010--Hb_002049_040 Hb_004598_010--Hb_001171_020 Hb_004598_010--Hb_006953_010 Hb_004598_010--Hb_107495_020 Hb_182291_010--Hb_002049_040 Hb_182291_010--Hb_006953_010 Hb_182291_010--Hb_001171_020 Hb_182291_010--Hb_107495_020 Hb_002049_040--Hb_006953_010 Hb_002049_040--Hb_107495_020 Hb_001536_070 Hb_001536_070 Hb_002049_040--Hb_001536_070 Hb_000514_010 Hb_000514_010 Hb_001171_020--Hb_000514_010 Hb_001171_020--Hb_002049_040 Hb_001171_020--Hb_006953_010 Hb_006953_010--Hb_107495_020 Hb_006953_010--Hb_001536_070 Hb_000265_040 Hb_000265_040 Hb_006953_010--Hb_000265_040 Hb_107495_020--Hb_001536_070 Hb_107495_020--Hb_000265_040 Hb_075653_010 Hb_075653_010 Hb_107495_020--Hb_075653_010 Hb_002305_040 Hb_002305_040 Hb_107495_020--Hb_002305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.749142 0.115205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis