Hb_002049_040

Information

Type -
Description -
Location Contig2049: 35165-36469
Sequence    

Annotation

kegg
ID tcc:TCM_005997
description Fimbriata
nr
ID XP_012078537.1
description PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
swissprot
ID Q39090
description Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2
trembl
ID A0A061DWR0
description Fimbriata OS=Theobroma cacao GN=TCM_005997 PE=4 SV=1
Gene Ontology
ID GO:0004842
description protein unusual floral organs

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002049_040 0.0 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
2 Hb_182291_010 0.0010722559 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
3 Hb_006953_010 0.002082525 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004598_010 0.0022958966 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
5 Hb_001372_010 0.0026237236 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_107495_020 0.004887644 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
7 Hb_001536_070 0.0056307346 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
8 Hb_001171_020 0.0056569983 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
9 Hb_000265_040 0.0057460253 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
10 Hb_075653_010 0.0097582245 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
11 Hb_002305_040 0.0107327041 - - TMV resistance protein N, putative [Ricinus communis]
12 Hb_000514_010 0.0110675007 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
13 Hb_004228_050 0.016335198 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
14 Hb_000592_150 0.0172690747 - - Os05g0413200 [Oryza sativa Japonica Group]
15 Hb_004722_050 0.0218612257 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
16 Hb_002585_050 0.0262934273 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001926_050 0.0317943081 - - PREDICTED: peroxidase 19 [Jatropha curcas]
18 Hb_000227_010 0.0335666726 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
19 Hb_007816_010 0.0340214314 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
20 Hb_002837_010 0.0389358147 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_002049_040 Hb_002049_040 Hb_182291_010 Hb_182291_010 Hb_002049_040--Hb_182291_010 Hb_006953_010 Hb_006953_010 Hb_002049_040--Hb_006953_010 Hb_004598_010 Hb_004598_010 Hb_002049_040--Hb_004598_010 Hb_001372_010 Hb_001372_010 Hb_002049_040--Hb_001372_010 Hb_107495_020 Hb_107495_020 Hb_002049_040--Hb_107495_020 Hb_001536_070 Hb_001536_070 Hb_002049_040--Hb_001536_070 Hb_182291_010--Hb_004598_010 Hb_182291_010--Hb_001372_010 Hb_182291_010--Hb_006953_010 Hb_001171_020 Hb_001171_020 Hb_182291_010--Hb_001171_020 Hb_182291_010--Hb_107495_020 Hb_006953_010--Hb_107495_020 Hb_006953_010--Hb_001536_070 Hb_000265_040 Hb_000265_040 Hb_006953_010--Hb_000265_040 Hb_006953_010--Hb_004598_010 Hb_004598_010--Hb_001372_010 Hb_004598_010--Hb_001171_020 Hb_004598_010--Hb_107495_020 Hb_001372_010--Hb_001171_020 Hb_001372_010--Hb_006953_010 Hb_001372_010--Hb_107495_020 Hb_107495_020--Hb_001536_070 Hb_107495_020--Hb_000265_040 Hb_075653_010 Hb_075653_010 Hb_107495_020--Hb_075653_010 Hb_002305_040 Hb_002305_040 Hb_107495_020--Hb_002305_040 Hb_001536_070--Hb_000265_040 Hb_001536_070--Hb_075653_010 Hb_001536_070--Hb_002305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.086675 0.0130882 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis