Hb_004117_070

Information

Type -
Description -
Location Contig4117: 46987-48894
Sequence    

Annotation

kegg
ID rcu:RCOM_1029180
description zinc finger protein, putative
nr
ID XP_012077436.1
description PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
swissprot
ID Q9SF78
description GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1
trembl
ID B9SK93
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1029180 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g71691

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_070 0.0 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
2 Hb_001926_050 0.008027121 - - PREDICTED: peroxidase 19 [Jatropha curcas]
3 Hb_030385_030 0.0122663426 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
4 Hb_011179_010 0.0156883308 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
5 Hb_004722_050 0.0179660435 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
6 Hb_000173_040 0.0217170615 - - putative xylanase inhibitor, partial [Triticum aestivum]
7 Hb_154114_040 0.022423543 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
8 Hb_000193_040 0.0249968701 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
9 Hb_022862_010 0.0270307862 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
10 Hb_000514_010 0.0287570185 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
11 Hb_000769_040 0.0308218883 - - hypothetical protein VITISV_028082 [Vitis vinifera]
12 Hb_001171_020 0.0341623824 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
13 Hb_012675_030 0.0356034899 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
14 Hb_090511_010 0.0359103077 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_001372_010 0.0371916342 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_004598_010 0.0375189764 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
17 Hb_130862_010 0.0381587953 - - purine permease, putative [Ricinus communis]
18 Hb_182291_010 0.0387407206 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
19 Hb_002049_040 0.0398112013 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
20 Hb_006953_010 0.041889973 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_004117_070 Hb_004117_070 Hb_001926_050 Hb_001926_050 Hb_004117_070--Hb_001926_050 Hb_030385_030 Hb_030385_030 Hb_004117_070--Hb_030385_030 Hb_011179_010 Hb_011179_010 Hb_004117_070--Hb_011179_010 Hb_004722_050 Hb_004722_050 Hb_004117_070--Hb_004722_050 Hb_000173_040 Hb_000173_040 Hb_004117_070--Hb_000173_040 Hb_154114_040 Hb_154114_040 Hb_004117_070--Hb_154114_040 Hb_001926_050--Hb_004722_050 Hb_001926_050--Hb_030385_030 Hb_000514_010 Hb_000514_010 Hb_001926_050--Hb_000514_010 Hb_001926_050--Hb_011179_010 Hb_001171_020 Hb_001171_020 Hb_001926_050--Hb_001171_020 Hb_030385_030--Hb_011179_010 Hb_030385_030--Hb_000173_040 Hb_030385_030--Hb_154114_040 Hb_000193_040 Hb_000193_040 Hb_030385_030--Hb_000193_040 Hb_022862_010 Hb_022862_010 Hb_030385_030--Hb_022862_010 Hb_011179_010--Hb_000173_040 Hb_011179_010--Hb_154114_040 Hb_011179_010--Hb_000193_040 Hb_011179_010--Hb_022862_010 Hb_000769_040 Hb_000769_040 Hb_011179_010--Hb_000769_040 Hb_004722_050--Hb_000514_010 Hb_004722_050--Hb_001171_020 Hb_001372_010 Hb_001372_010 Hb_004722_050--Hb_001372_010 Hb_004598_010 Hb_004598_010 Hb_004722_050--Hb_004598_010 Hb_000173_040--Hb_154114_040 Hb_000173_040--Hb_000193_040 Hb_000173_040--Hb_022862_010 Hb_000173_040--Hb_000769_040 Hb_154114_040--Hb_000193_040 Hb_154114_040--Hb_022862_010 Hb_154114_040--Hb_000769_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.471555 0.0927998 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis