Hb_022862_010

Information

Type transcription factor
Description TF Family: LOB
Location Contig22862: 21315-21980
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07930g
description POPTRDRAFT_656362; LOB domain protein 6
nr
ID XP_012078919.1
description PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
swissprot
ID O04479
description LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1
trembl
ID A0A067K8Q0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13417 PE=4 SV=1
Gene Ontology
ID GO:0005654
description lob domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022862_010 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
2 Hb_000193_040 0.0020350549 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
3 Hb_000769_040 0.0037936913 - - hypothetical protein VITISV_028082 [Vitis vinifera]
4 Hb_154114_040 0.0046095681 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
5 Hb_000173_040 0.005316325 - - putative xylanase inhibitor, partial [Triticum aestivum]
6 Hb_012675_030 0.0085794082 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
7 Hb_090511_010 0.0088865218 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_130862_010 0.0111372933 - - purine permease, putative [Ricinus communis]
9 Hb_011179_010 0.01134651 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
10 Hb_030385_030 0.0147685965 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
11 Hb_105767_030 0.0203950485 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007975_070 0.0217989134 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
13 Hb_000417_240 0.0267424881 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
14 Hb_003995_040 0.0268825477 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
15 Hb_004117_070 0.0270307862 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
16 Hb_000173_070 0.0275626847 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
17 Hb_000307_080 0.0285539732 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000280_070 0.0305146489 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
19 Hb_000691_060 0.0307532916 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
20 Hb_000784_050 0.0310390018 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_022862_010 Hb_022862_010 Hb_000193_040 Hb_000193_040 Hb_022862_010--Hb_000193_040 Hb_000769_040 Hb_000769_040 Hb_022862_010--Hb_000769_040 Hb_154114_040 Hb_154114_040 Hb_022862_010--Hb_154114_040 Hb_000173_040 Hb_000173_040 Hb_022862_010--Hb_000173_040 Hb_012675_030 Hb_012675_030 Hb_022862_010--Hb_012675_030 Hb_090511_010 Hb_090511_010 Hb_022862_010--Hb_090511_010 Hb_000193_040--Hb_154114_040 Hb_000193_040--Hb_000173_040 Hb_000193_040--Hb_000769_040 Hb_011179_010 Hb_011179_010 Hb_000193_040--Hb_011179_010 Hb_000193_040--Hb_012675_030 Hb_000769_040--Hb_012675_030 Hb_000769_040--Hb_090511_010 Hb_130862_010 Hb_130862_010 Hb_000769_040--Hb_130862_010 Hb_000769_040--Hb_154114_040 Hb_154114_040--Hb_000173_040 Hb_154114_040--Hb_011179_010 Hb_030385_030 Hb_030385_030 Hb_154114_040--Hb_030385_030 Hb_000173_040--Hb_011179_010 Hb_000173_040--Hb_000769_040 Hb_000173_040--Hb_030385_030 Hb_012675_030--Hb_090511_010 Hb_012675_030--Hb_130862_010 Hb_105767_030 Hb_105767_030 Hb_012675_030--Hb_105767_030 Hb_090511_010--Hb_130862_010 Hb_090511_010--Hb_000193_040 Hb_090511_010--Hb_105767_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.442265 0.102865 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis