Hb_154114_040

Information

Type -
Description -
Location Contig154114: 17777-19939
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10380g
description hypothetical protein
nr
ID KJB07978.1
description hypothetical protein B456_001G056600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2N5X3
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G056600 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain repeat 6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154114_040 0.0 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
2 Hb_000173_040 0.0007067707 - - putative xylanase inhibitor, partial [Triticum aestivum]
3 Hb_000193_040 0.0025745324 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
4 Hb_022862_010 0.0046095681 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
5 Hb_011179_010 0.0067372268 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
6 Hb_000769_040 0.0084031438 - - hypothetical protein VITISV_028082 [Vitis vinifera]
7 Hb_030385_030 0.0101595911 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
8 Hb_012675_030 0.0131885695 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
9 Hb_090511_010 0.013495659 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
10 Hb_130862_010 0.0157462339 - - purine permease, putative [Ricinus communis]
11 Hb_004117_070 0.022423543 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
12 Hb_105767_030 0.025002822 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007975_070 0.0264064607 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
14 Hb_001926_050 0.0304457908 - - PREDICTED: peroxidase 19 [Jatropha curcas]
15 Hb_000417_240 0.0313491388 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
16 Hb_003995_040 0.0314891707 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
17 Hb_000173_070 0.0321691717 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
18 Hb_000691_060 0.0324698928 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
19 Hb_000307_080 0.0331602568 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000280_070 0.0351205123 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_154114_040 Hb_154114_040 Hb_000173_040 Hb_000173_040 Hb_154114_040--Hb_000173_040 Hb_000193_040 Hb_000193_040 Hb_154114_040--Hb_000193_040 Hb_022862_010 Hb_022862_010 Hb_154114_040--Hb_022862_010 Hb_011179_010 Hb_011179_010 Hb_154114_040--Hb_011179_010 Hb_000769_040 Hb_000769_040 Hb_154114_040--Hb_000769_040 Hb_030385_030 Hb_030385_030 Hb_154114_040--Hb_030385_030 Hb_000173_040--Hb_000193_040 Hb_000173_040--Hb_022862_010 Hb_000173_040--Hb_011179_010 Hb_000173_040--Hb_000769_040 Hb_000173_040--Hb_030385_030 Hb_000193_040--Hb_022862_010 Hb_000193_040--Hb_000769_040 Hb_000193_040--Hb_011179_010 Hb_012675_030 Hb_012675_030 Hb_000193_040--Hb_012675_030 Hb_022862_010--Hb_000769_040 Hb_022862_010--Hb_012675_030 Hb_090511_010 Hb_090511_010 Hb_022862_010--Hb_090511_010 Hb_011179_010--Hb_030385_030 Hb_011179_010--Hb_022862_010 Hb_011179_010--Hb_000769_040 Hb_000769_040--Hb_012675_030 Hb_000769_040--Hb_090511_010 Hb_130862_010 Hb_130862_010 Hb_000769_040--Hb_130862_010 Hb_004117_070 Hb_004117_070 Hb_030385_030--Hb_004117_070 Hb_030385_030--Hb_000193_040 Hb_030385_030--Hb_022862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.322463 0.0729397 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis