Hb_030385_030

Information

Type -
Description -
Location Contig30385: 64507-66735
Sequence    

Annotation

kegg
ID rcu:RCOM_0813720
description DNA binding protein, putative
nr
ID XP_012066890.1
description PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
swissprot
ID Q1G3M3
description B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1
trembl
ID B9RYJ7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0813720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32066: 61627-66801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030385_030 0.0 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
2 Hb_011179_010 0.0034225589 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
3 Hb_000173_040 0.0094528761 - - putative xylanase inhibitor, partial [Triticum aestivum]
4 Hb_154114_040 0.0101595911 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
5 Hb_004117_070 0.0122663426 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
6 Hb_000193_040 0.0127338515 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
7 Hb_022862_010 0.0147685965 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
8 Hb_000769_040 0.0185614547 - - hypothetical protein VITISV_028082 [Vitis vinifera]
9 Hb_001926_050 0.0202916514 - - PREDICTED: peroxidase 19 [Jatropha curcas]
10 Hb_012675_030 0.0233456556 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
11 Hb_090511_010 0.0236526545 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_130862_010 0.0259025221 - - purine permease, putative [Ricinus communis]
13 Hb_004722_050 0.0302262257 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
14 Hb_105767_030 0.0351554136 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007975_070 0.0365583839 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
16 Hb_000691_060 0.0379908405 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
17 Hb_000514_010 0.0410096954 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
18 Hb_000417_240 0.0414984881 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
19 Hb_003995_040 0.0416384422 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
20 Hb_000173_070 0.0423180614 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]

Gene co-expression network

sample Hb_030385_030 Hb_030385_030 Hb_011179_010 Hb_011179_010 Hb_030385_030--Hb_011179_010 Hb_000173_040 Hb_000173_040 Hb_030385_030--Hb_000173_040 Hb_154114_040 Hb_154114_040 Hb_030385_030--Hb_154114_040 Hb_004117_070 Hb_004117_070 Hb_030385_030--Hb_004117_070 Hb_000193_040 Hb_000193_040 Hb_030385_030--Hb_000193_040 Hb_022862_010 Hb_022862_010 Hb_030385_030--Hb_022862_010 Hb_011179_010--Hb_000173_040 Hb_011179_010--Hb_154114_040 Hb_011179_010--Hb_000193_040 Hb_011179_010--Hb_022862_010 Hb_000769_040 Hb_000769_040 Hb_011179_010--Hb_000769_040 Hb_000173_040--Hb_154114_040 Hb_000173_040--Hb_000193_040 Hb_000173_040--Hb_022862_010 Hb_000173_040--Hb_000769_040 Hb_154114_040--Hb_000193_040 Hb_154114_040--Hb_022862_010 Hb_154114_040--Hb_000769_040 Hb_001926_050 Hb_001926_050 Hb_004117_070--Hb_001926_050 Hb_004117_070--Hb_011179_010 Hb_004722_050 Hb_004722_050 Hb_004117_070--Hb_004722_050 Hb_004117_070--Hb_000173_040 Hb_004117_070--Hb_154114_040 Hb_000193_040--Hb_022862_010 Hb_000193_040--Hb_000769_040 Hb_012675_030 Hb_012675_030 Hb_000193_040--Hb_012675_030 Hb_022862_010--Hb_000769_040 Hb_022862_010--Hb_012675_030 Hb_090511_010 Hb_090511_010 Hb_022862_010--Hb_090511_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.96464 0.205019 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis