Hb_001061_010

Information

Type -
Description -
Location Contig1061: 18134-24196
Sequence    

Annotation

kegg
ID vvi:100243595
description uncharacterized LOC100243595
nr
ID XP_010657601.1
description PREDICTED: uncharacterized protein LOC100243595 [Vitis vinifera]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID A0A061E3C8
description Chloroplast-targeted copper chaperone protein OS=Theobroma cacao GN=TCM_007528 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01997: 18029-24402
cDNA
(Sanger)
(ID:Location)		 006_K18.ab1: 18033-24258 , 032_G03.ab1: 18029-24322 , 050_L08.ab1: 18029-24234

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001061_010 0.0 - - PREDICTED: uncharacterized protein LOC100243595 [Vitis vinifera]
2 Hb_001519_080 0.0988766474 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_008642_020 0.1030460664 - - sterol desaturase, putative [Ricinus communis]
4 Hb_001952_100 0.1039162024 - - PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
5 Hb_007558_060 0.1057428092 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
6 Hb_000005_390 0.1058144952 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
7 Hb_011218_020 0.1076395942 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001652_090 0.1076696202 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000563_110 0.108939511 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
10 Hb_004800_030 0.1094895854 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
11 Hb_005550_060 0.1129747354 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
12 Hb_005170_050 0.1150034047 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
13 Hb_000505_030 0.1156813259 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006485_020 0.1156923642 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
15 Hb_002843_200 0.1157065749 - - conserved hypothetical protein [Ricinus communis]
16 Hb_017959_020 0.1197210832 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
17 Hb_002079_100 0.120232637 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
18 Hb_006909_050 0.120477693 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
19 Hb_002045_020 0.1211946681 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
20 Hb_002376_020 0.1212620013 - - lectin, partial [Lathyrus palustris]

Gene co-expression network

sample Hb_001061_010 Hb_001061_010 Hb_001519_080 Hb_001519_080 Hb_001061_010--Hb_001519_080 Hb_008642_020 Hb_008642_020 Hb_001061_010--Hb_008642_020 Hb_001952_100 Hb_001952_100 Hb_001061_010--Hb_001952_100 Hb_007558_060 Hb_007558_060 Hb_001061_010--Hb_007558_060 Hb_000005_390 Hb_000005_390 Hb_001061_010--Hb_000005_390 Hb_011218_020 Hb_011218_020 Hb_001061_010--Hb_011218_020 Hb_001519_080--Hb_008642_020 Hb_001519_080--Hb_007558_060 Hb_005170_050 Hb_005170_050 Hb_001519_080--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_001519_080--Hb_005550_060 Hb_001519_080--Hb_000005_390 Hb_000505_030 Hb_000505_030 Hb_001519_080--Hb_000505_030 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_000005_390 Hb_000563_110 Hb_000563_110 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005550_060 Hb_008642_020--Hb_005170_050 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150 Hb_000155_280 Hb_000155_280 Hb_001952_100--Hb_000155_280 Hb_006485_020 Hb_006485_020 Hb_001952_100--Hb_006485_020 Hb_017959_020 Hb_017959_020 Hb_001952_100--Hb_017959_020 Hb_002026_040 Hb_002026_040 Hb_001952_100--Hb_002026_040 Hb_002376_020 Hb_002376_020 Hb_001952_100--Hb_002376_020 Hb_002843_200 Hb_002843_200 Hb_001952_100--Hb_002843_200 Hb_007558_060--Hb_000563_110 Hb_007558_060--Hb_000005_390 Hb_007558_060--Hb_005170_050 Hb_007558_060--Hb_005550_060 Hb_000005_390--Hb_005550_060 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_000544_150 Hb_000005_390--Hb_000563_110 Hb_000005_390--Hb_006485_020 Hb_006332_030 Hb_006332_030 Hb_011218_020--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011218_020--Hb_028995_020 Hb_011218_020--Hb_017959_020 Hb_011218_020--Hb_000563_110 Hb_011218_020--Hb_001652_090 Hb_004117_240 Hb_004117_240 Hb_011218_020--Hb_004117_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198797 0.134523 18.4205 2.27923 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.13973 0 0.618404

CAGE analysis