Hb_002843_200

Information

Type -
Description -
Location Contig2843: 198915-200842
Sequence    

Annotation

kegg
ID rcu:RCOM_0595450
description hypothetical protein
nr
ID XP_002525813.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID B9SIJ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0595450 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein iq-domain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29768: 199455-200599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002026_040 0.0657091996 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
3 Hb_013849_010 0.0682928346 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
4 Hb_000155_280 0.0701963711 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
5 Hb_000227_010 0.0744792598 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
6 Hb_006485_020 0.0766165742 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
7 Hb_007816_010 0.0779186984 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
8 Hb_002837_010 0.0781402166 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
9 Hb_002585_050 0.0781943819 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011846_020 0.0787656091 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
11 Hb_002186_150 0.0790502481 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
12 Hb_046150_010 0.0790559063 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
13 Hb_000592_150 0.0794670218 - - Os05g0413200 [Oryza sativa Japonica Group]
14 Hb_004744_030 0.079591089 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
15 Hb_004228_050 0.0796555517 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
16 Hb_000500_380 0.0797302449 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
17 Hb_002305_040 0.0810018246 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_000212_170 0.0810368226 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
19 Hb_075653_010 0.0812728008 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
20 Hb_017959_020 0.0812928527 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]

Gene co-expression network

sample Hb_002843_200 Hb_002843_200 Hb_002026_040 Hb_002026_040 Hb_002843_200--Hb_002026_040 Hb_013849_010 Hb_013849_010 Hb_002843_200--Hb_013849_010 Hb_000155_280 Hb_000155_280 Hb_002843_200--Hb_000155_280 Hb_000227_010 Hb_000227_010 Hb_002843_200--Hb_000227_010 Hb_006485_020 Hb_006485_020 Hb_002843_200--Hb_006485_020 Hb_007816_010 Hb_007816_010 Hb_002843_200--Hb_007816_010 Hb_002026_040--Hb_013849_010 Hb_002026_040--Hb_000155_280 Hb_002585_050 Hb_002585_050 Hb_002026_040--Hb_002585_050 Hb_002026_040--Hb_007816_010 Hb_000592_150 Hb_000592_150 Hb_002026_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_002026_040--Hb_004228_050 Hb_011846_020 Hb_011846_020 Hb_013849_010--Hb_011846_020 Hb_002837_010 Hb_002837_010 Hb_013849_010--Hb_002837_010 Hb_002186_150 Hb_002186_150 Hb_013849_010--Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_013849_010--Hb_046150_010 Hb_004744_030 Hb_004744_030 Hb_013849_010--Hb_004744_030 Hb_000155_280--Hb_006485_020 Hb_017959_020 Hb_017959_020 Hb_000155_280--Hb_017959_020 Hb_000155_280--Hb_013849_010 Hb_002376_020 Hb_002376_020 Hb_000155_280--Hb_002376_020 Hb_005170_050 Hb_005170_050 Hb_000155_280--Hb_005170_050 Hb_000227_010--Hb_002585_050 Hb_000227_010--Hb_000592_150 Hb_000227_010--Hb_004228_050 Hb_002305_040 Hb_002305_040 Hb_000227_010--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_000227_010--Hb_075653_010 Hb_000227_010--Hb_007816_010 Hb_006485_020--Hb_017959_020 Hb_006485_020--Hb_002376_020 Hb_006485_020--Hb_002026_040 Hb_006485_020--Hb_005170_050 Hb_000005_390 Hb_000005_390 Hb_006485_020--Hb_000005_390 Hb_007816_010--Hb_002837_010 Hb_007816_010--Hb_002585_050 Hb_007816_010--Hb_011846_020 Hb_007816_010--Hb_002186_150 Hb_007816_010--Hb_046150_010 Hb_007816_010--Hb_004744_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0163284 0 11.2673 1.33763 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0885752 0 0.0493208

CAGE analysis