Hb_000005_390

Information

Type -
Description -
Location Contig5: 506455-515931
Sequence    

Annotation

kegg
ID rcu:RCOM_0774930
description Lignin-forming anionic peroxidase precursor, putative (EC:1.11.1.7)
nr
ID KDP38219.1
description hypothetical protein JCGZ_04862 [Jatropha curcas]
swissprot
ID Q02200
description Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1
trembl
ID A0A067L2D5
description Peroxidase OS=Jatropha curcas GN=JCGZ_04862 PE=3 SV=1
Gene Ontology
ID GO:0005576
description lignin-forming anionic peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45727: 513446-513665 , PASA_asmbl_45728: 513681-514941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_390 0.0 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
2 Hb_005550_060 0.030348788 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
3 Hb_001652_090 0.0366439024 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008642_020 0.0432744029 - - sterol desaturase, putative [Ricinus communis]
5 Hb_000544_150 0.0498685361 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
6 Hb_000563_110 0.0532577069 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
7 Hb_006485_020 0.056357552 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
8 Hb_002376_020 0.0571799447 - - lectin, partial [Lathyrus palustris]
9 Hb_002045_020 0.0587633479 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
10 Hb_005170_050 0.0637314476 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
11 Hb_017959_020 0.0678495475 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
12 Hb_007558_060 0.0686064377 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
13 Hb_000155_280 0.0752656572 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
14 Hb_000023_030 0.0774729644 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
15 Hb_011218_020 0.077576014 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001519_080 0.0805021154 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
17 Hb_012368_040 0.0829045881 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000005_160 0.0845986941 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_008252_010 0.0861090907 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
20 Hb_000175_110 0.0870200219 - - hypothetical protein JCGZ_06125 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_390 Hb_000005_390 Hb_005550_060 Hb_005550_060 Hb_000005_390--Hb_005550_060 Hb_001652_090 Hb_001652_090 Hb_000005_390--Hb_001652_090 Hb_008642_020 Hb_008642_020 Hb_000005_390--Hb_008642_020 Hb_000544_150 Hb_000544_150 Hb_000005_390--Hb_000544_150 Hb_000563_110 Hb_000563_110 Hb_000005_390--Hb_000563_110 Hb_006485_020 Hb_006485_020 Hb_000005_390--Hb_006485_020 Hb_005550_060--Hb_000544_150 Hb_002376_020 Hb_002376_020 Hb_005550_060--Hb_002376_020 Hb_005550_060--Hb_008642_020 Hb_005170_050 Hb_005170_050 Hb_005550_060--Hb_005170_050 Hb_005550_060--Hb_006485_020 Hb_001652_090--Hb_000563_110 Hb_012368_040 Hb_012368_040 Hb_001652_090--Hb_012368_040 Hb_001652_090--Hb_008642_020 Hb_011218_020 Hb_011218_020 Hb_001652_090--Hb_011218_020 Hb_002045_020 Hb_002045_020 Hb_001652_090--Hb_002045_020 Hb_007558_060 Hb_007558_060 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_000563_110 Hb_008642_020--Hb_005170_050 Hb_008642_020--Hb_000544_150 Hb_007741_010 Hb_007741_010 Hb_000544_150--Hb_007741_010 Hb_000005_160 Hb_000005_160 Hb_000544_150--Hb_000005_160 Hb_000544_150--Hb_002376_020 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000563_110--Hb_002045_020 Hb_000563_110--Hb_012368_040 Hb_000155_280 Hb_000155_280 Hb_006485_020--Hb_000155_280 Hb_017959_020 Hb_017959_020 Hb_006485_020--Hb_017959_020 Hb_006485_020--Hb_002376_020 Hb_002026_040 Hb_002026_040 Hb_006485_020--Hb_002026_040 Hb_006485_020--Hb_005170_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.04291 0.334149 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.108316

CAGE analysis