Hb_002045_020

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2045: 27327-29996
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04580g
description POPTRDRAFT_643213; auxin-induced protein aux28
nr
ID XP_002302075.1
description auxin-induced protein aux28 [Populus trichocarpa]
swissprot
ID P13089
description Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1
trembl
ID L0AUG3
description Auxin-responsive protein OS=Populus tomentosa PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-induced protein aux28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21025: 27309-29986 , PASA_asmbl_21027: 29050-29513
cDNA
(Sanger)
(ID:Location)		 042_K18.ab1: 27454-28623

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_020 0.0 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
2 Hb_000023_030 0.0220656807 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
3 Hb_003226_040 0.0527727298 - - PREDICTED: endoglucanase 17 [Populus euphratica]
4 Hb_000563_110 0.0552257924 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
5 Hb_000005_390 0.0587633479 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
6 Hb_000005_160 0.0615288978 - - tonoplast intrinsic protein, putative [Ricinus communis]
7 Hb_001652_090 0.0622991565 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004117_060 0.0633411772 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
9 Hb_012368_040 0.0683222843 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008642_020 0.0698530004 - - sterol desaturase, putative [Ricinus communis]
11 Hb_000544_150 0.0752988102 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
12 Hb_003464_040 0.076524306 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_007558_060 0.0774534704 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
14 Hb_005550_060 0.0780579486 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
15 Hb_002235_260 0.0797913422 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
16 Hb_000175_110 0.0863871443 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
17 Hb_000243_180 0.0874546275 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
18 Hb_000152_200 0.0878351267 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
19 Hb_177533_010 0.0890443371 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
20 Hb_005198_010 0.0903817886 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002045_020 Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_002045_020--Hb_000023_030 Hb_003226_040 Hb_003226_040 Hb_002045_020--Hb_003226_040 Hb_000563_110 Hb_000563_110 Hb_002045_020--Hb_000563_110 Hb_000005_390 Hb_000005_390 Hb_002045_020--Hb_000005_390 Hb_000005_160 Hb_000005_160 Hb_002045_020--Hb_000005_160 Hb_001652_090 Hb_001652_090 Hb_002045_020--Hb_001652_090 Hb_004117_060 Hb_004117_060 Hb_000023_030--Hb_004117_060 Hb_000023_030--Hb_003226_040 Hb_000023_030--Hb_000005_160 Hb_002235_260 Hb_002235_260 Hb_000023_030--Hb_002235_260 Hb_000023_030--Hb_000563_110 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_003226_040--Hb_003464_040 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_003226_040--Hb_004117_060 Hb_000563_110--Hb_001652_090 Hb_008642_020 Hb_008642_020 Hb_000563_110--Hb_008642_020 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000563_110--Hb_000005_390 Hb_000563_110--Hb_012368_040 Hb_005550_060 Hb_005550_060 Hb_000005_390--Hb_005550_060 Hb_000005_390--Hb_001652_090 Hb_000005_390--Hb_008642_020 Hb_000544_150 Hb_000544_150 Hb_000005_390--Hb_000544_150 Hb_006485_020 Hb_006485_020 Hb_000005_390--Hb_006485_020 Hb_007741_010 Hb_007741_010 Hb_000005_160--Hb_007741_010 Hb_000152_200 Hb_000152_200 Hb_000005_160--Hb_000152_200 Hb_000005_160--Hb_000544_150 Hb_000556_050 Hb_000556_050 Hb_000005_160--Hb_000556_050 Hb_001652_090--Hb_012368_040 Hb_001652_090--Hb_008642_020 Hb_011218_020 Hb_011218_020 Hb_001652_090--Hb_011218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0469247 306.698 34.0486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0126942 21.4545

CAGE analysis