Hb_004117_060

Information

Type -
Description -
Location Contig4117: 40751-44823
Sequence    

Annotation

kegg
ID rcu:RCOM_1029070
description zinc finger protein, putative
nr
ID XP_012077448.1
description PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
swissprot
ID Q8L5Z1
description GDSL esterase/lipase At1g33811 OS=Arabidopsis thaliana GN=At1g33811 PE=2 SV=1
trembl
ID A0A067LMK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17251 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g33811

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40744: 40804-41648 , PASA_asmbl_40745: 43100-44652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_060 0.0 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
2 Hb_002235_260 0.0279115315 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
3 Hb_000023_030 0.0455516243 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
4 Hb_001921_040 0.0588226863 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
5 Hb_008165_010 0.0632018363 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
6 Hb_002045_020 0.0633411772 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
7 Hb_019762_030 0.0640068513 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
8 Hb_003226_040 0.0664126976 - - PREDICTED: endoglucanase 17 [Populus euphratica]
9 Hb_005198_010 0.0697170492 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
10 Hb_000243_180 0.0719433032 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
11 Hb_001926_010 0.0789155249 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
12 Hb_000436_110 0.081392931 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
13 Hb_000005_160 0.0851055949 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_001677_070 0.087041001 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
15 Hb_018663_010 0.0894797952 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
16 Hb_000853_340 0.0921399699 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
17 Hb_000556_050 0.0922106181 - - -
18 Hb_102900_010 0.0935416417 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
19 Hb_177533_010 0.0948863281 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
20 Hb_000563_110 0.1006615313 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]

Gene co-expression network

sample Hb_004117_060 Hb_004117_060 Hb_002235_260 Hb_002235_260 Hb_004117_060--Hb_002235_260 Hb_000023_030 Hb_000023_030 Hb_004117_060--Hb_000023_030 Hb_001921_040 Hb_001921_040 Hb_004117_060--Hb_001921_040 Hb_008165_010 Hb_008165_010 Hb_004117_060--Hb_008165_010 Hb_002045_020 Hb_002045_020 Hb_004117_060--Hb_002045_020 Hb_019762_030 Hb_019762_030 Hb_004117_060--Hb_019762_030 Hb_002235_260--Hb_001921_040 Hb_002235_260--Hb_019762_030 Hb_002235_260--Hb_008165_010 Hb_002235_260--Hb_000023_030 Hb_005198_010 Hb_005198_010 Hb_002235_260--Hb_005198_010 Hb_000023_030--Hb_002045_020 Hb_003226_040 Hb_003226_040 Hb_000023_030--Hb_003226_040 Hb_000005_160 Hb_000005_160 Hb_000023_030--Hb_000005_160 Hb_000563_110 Hb_000563_110 Hb_000023_030--Hb_000563_110 Hb_001926_010 Hb_001926_010 Hb_001921_040--Hb_001926_010 Hb_000243_180 Hb_000243_180 Hb_001921_040--Hb_000243_180 Hb_001921_040--Hb_005198_010 Hb_001921_040--Hb_003226_040 Hb_000436_110 Hb_000436_110 Hb_008165_010--Hb_000436_110 Hb_102900_010 Hb_102900_010 Hb_008165_010--Hb_102900_010 Hb_018663_010 Hb_018663_010 Hb_008165_010--Hb_018663_010 Hb_010737_030 Hb_010737_030 Hb_008165_010--Hb_010737_030 Hb_002045_020--Hb_003226_040 Hb_002045_020--Hb_000563_110 Hb_000005_390 Hb_000005_390 Hb_002045_020--Hb_000005_390 Hb_002045_020--Hb_000005_160 Hb_001652_090 Hb_001652_090 Hb_002045_020--Hb_001652_090 Hb_000853_340 Hb_000853_340 Hb_019762_030--Hb_000853_340 Hb_019762_030--Hb_005198_010 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.374 1.4623 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0141123 1.59382

CAGE analysis