Hb_000023_030

Information

Type transcription factor
Description TF Family: HB
Location Contig23: 53068-57840
Sequence    

Annotation

kegg
ID rcu:RCOM_1315300
description homeobox protein, putative
nr
ID XP_012081064.1
description PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
swissprot
ID Q9FJS2
description Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana GN=HDG5 PE=2 SV=3
trembl
ID A0A067KEU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17113 PE=4 SV=1
Gene Ontology
ID GO:0008289
description homeobox-leucine zipper protein hdg5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_030 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
2 Hb_002045_020 0.0220656807 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
3 Hb_004117_060 0.0455516243 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
4 Hb_003226_040 0.0534136396 - - PREDICTED: endoglucanase 17 [Populus euphratica]
5 Hb_000005_160 0.0591564843 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_002235_260 0.0643707302 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
7 Hb_000563_110 0.0725477946 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
8 Hb_005198_010 0.0762051464 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
9 Hb_012368_040 0.0773772701 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000005_390 0.0774729644 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
11 Hb_001652_090 0.0802986292 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001921_040 0.0809030623 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_000243_180 0.0831386298 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
14 Hb_003464_040 0.0840012063 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_008165_010 0.0853680756 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
16 Hb_177533_010 0.0857260725 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_000544_150 0.0875094911 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
18 Hb_008642_020 0.0881448688 - - sterol desaturase, putative [Ricinus communis]
19 Hb_000152_200 0.0888405824 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
20 Hb_001677_070 0.0913827372 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_030 Hb_000023_030 Hb_002045_020 Hb_002045_020 Hb_000023_030--Hb_002045_020 Hb_004117_060 Hb_004117_060 Hb_000023_030--Hb_004117_060 Hb_003226_040 Hb_003226_040 Hb_000023_030--Hb_003226_040 Hb_000005_160 Hb_000005_160 Hb_000023_030--Hb_000005_160 Hb_002235_260 Hb_002235_260 Hb_000023_030--Hb_002235_260 Hb_000563_110 Hb_000563_110 Hb_000023_030--Hb_000563_110 Hb_002045_020--Hb_003226_040 Hb_002045_020--Hb_000563_110 Hb_000005_390 Hb_000005_390 Hb_002045_020--Hb_000005_390 Hb_002045_020--Hb_000005_160 Hb_001652_090 Hb_001652_090 Hb_002045_020--Hb_001652_090 Hb_004117_060--Hb_002235_260 Hb_001921_040 Hb_001921_040 Hb_004117_060--Hb_001921_040 Hb_008165_010 Hb_008165_010 Hb_004117_060--Hb_008165_010 Hb_004117_060--Hb_002045_020 Hb_019762_030 Hb_019762_030 Hb_004117_060--Hb_019762_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_003226_040--Hb_003464_040 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_003226_040--Hb_004117_060 Hb_007741_010 Hb_007741_010 Hb_000005_160--Hb_007741_010 Hb_000152_200 Hb_000152_200 Hb_000005_160--Hb_000152_200 Hb_000544_150 Hb_000544_150 Hb_000005_160--Hb_000544_150 Hb_000556_050 Hb_000556_050 Hb_000005_160--Hb_000556_050 Hb_002235_260--Hb_001921_040 Hb_002235_260--Hb_019762_030 Hb_002235_260--Hb_008165_010 Hb_005198_010 Hb_005198_010 Hb_002235_260--Hb_005198_010 Hb_000563_110--Hb_001652_090 Hb_008642_020 Hb_008642_020 Hb_000563_110--Hb_008642_020 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000563_110--Hb_000005_390 Hb_000563_110--Hb_012368_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.1632 0.5533 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.434415

CAGE analysis