Hb_003226_040

Information

Type -
Description -
Location Contig3226: 33846-36057
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20350g
description POPTRDRAFT_850247; hypothetical protein
nr
ID XP_011041962.1
description PREDICTED: endoglucanase 17 [Populus euphratica]
swissprot
ID O81416
description Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1
trembl
ID A0A068EXJ9
description Endoglucanase OS=Gossypium hirsutum PE=2 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34154: 33573-36206
cDNA
(Sanger)
(ID:Location)		 023_H17.ab1: 35193-36148 , 032_A09.ab1: 35035-36148 , 049_P05.ab1: 35192-36148

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_040 0.0 - - PREDICTED: endoglucanase 17 [Populus euphratica]
2 Hb_002045_020 0.0527727298 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
3 Hb_000023_030 0.0534136396 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
4 Hb_012368_040 0.0601289837 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003464_040 0.0629684641 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
6 Hb_052530_010 0.0656115029 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
7 Hb_004117_060 0.0664126976 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
8 Hb_000243_180 0.0695695123 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
9 Hb_000436_110 0.0696574431 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
10 Hb_008165_010 0.0708246389 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
11 Hb_000563_110 0.0723983598 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
12 Hb_002235_260 0.0732255358 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
13 Hb_018663_010 0.0797374515 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
14 Hb_001921_040 0.0803271596 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
15 Hb_000375_200 0.0838966636 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
16 Hb_001652_090 0.0840287757 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000193_170 0.0889000361 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
18 Hb_001926_010 0.0891760144 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
19 Hb_000816_080 0.0911209718 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
20 Hb_001677_070 0.0937843567 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_040 Hb_003226_040 Hb_002045_020 Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_012368_040 Hb_012368_040 Hb_003226_040--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_003226_040--Hb_003464_040 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_004117_060 Hb_004117_060 Hb_003226_040--Hb_004117_060 Hb_002045_020--Hb_000023_030 Hb_000563_110 Hb_000563_110 Hb_002045_020--Hb_000563_110 Hb_000005_390 Hb_000005_390 Hb_002045_020--Hb_000005_390 Hb_000005_160 Hb_000005_160 Hb_002045_020--Hb_000005_160 Hb_001652_090 Hb_001652_090 Hb_002045_020--Hb_001652_090 Hb_000023_030--Hb_004117_060 Hb_000023_030--Hb_000005_160 Hb_002235_260 Hb_002235_260 Hb_000023_030--Hb_002235_260 Hb_000023_030--Hb_000563_110 Hb_012368_040--Hb_003464_040 Hb_012368_040--Hb_001652_090 Hb_012368_040--Hb_000563_110 Hb_000193_170 Hb_000193_170 Hb_012368_040--Hb_000193_170 Hb_000375_200 Hb_000375_200 Hb_012368_040--Hb_000375_200 Hb_003464_040--Hb_000193_170 Hb_003464_040--Hb_000375_200 Hb_003464_040--Hb_001652_090 Hb_003464_040--Hb_000563_110 Hb_002453_040 Hb_002453_040 Hb_052530_010--Hb_002453_040 Hb_000445_320 Hb_000445_320 Hb_052530_010--Hb_000445_320 Hb_000816_080 Hb_000816_080 Hb_052530_010--Hb_000816_080 Hb_052530_010--Hb_000193_170 Hb_052530_010--Hb_003464_040 Hb_004117_060--Hb_002235_260 Hb_001921_040 Hb_001921_040 Hb_004117_060--Hb_001921_040 Hb_008165_010 Hb_008165_010 Hb_004117_060--Hb_008165_010 Hb_004117_060--Hb_002045_020 Hb_019762_030 Hb_019762_030 Hb_004117_060--Hb_019762_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0602229 17.9447 2.59629 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.6161

CAGE analysis