Hb_000445_320

Information

Type -
Description -
Location Contig445: 368766-376339
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14520g
description hypothetical protein
nr
ID XP_012446045.1
description PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
swissprot
ID C0LGG4
description Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2
trembl
ID A0A0D2UTM4
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G250500 PE=4 SV=1
Gene Ontology
ID GO:0005488
description wall-associated receptor kinase-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42914: 369145-372997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_320 0.0 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
2 Hb_000187_020 0.0550070779 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
3 Hb_002453_040 0.073427276 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
4 Hb_052530_010 0.0795163616 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
5 Hb_059832_010 0.0799748591 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
6 Hb_000193_170 0.0840222811 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
7 Hb_005918_020 0.0862331846 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
8 Hb_008226_050 0.086280341 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
9 Hb_000375_200 0.0903370045 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
10 Hb_030545_020 0.0903787191 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004003_020 0.0917175337 - - unnamed protein product [Coffea canephora]
12 Hb_000051_130 0.0941198012 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_000527_030 0.0975284683 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
14 Hb_000130_400 0.1005022406 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
15 Hb_011859_010 0.1066384363 - - hypothetical protein VITISV_027923 [Vitis vinifera]
16 Hb_000120_260 0.1095299928 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
17 Hb_018663_010 0.1097000956 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
18 Hb_000816_080 0.1099853146 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
19 Hb_010737_030 0.1101333062 - - unnamed protein product [Vitis vinifera]
20 Hb_158845_010 0.1118649708 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_320 Hb_000445_320 Hb_000187_020 Hb_000187_020 Hb_000445_320--Hb_000187_020 Hb_002453_040 Hb_002453_040 Hb_000445_320--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000445_320--Hb_052530_010 Hb_059832_010 Hb_059832_010 Hb_000445_320--Hb_059832_010 Hb_000193_170 Hb_000193_170 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020 Hb_000375_200 Hb_000375_200 Hb_000187_020--Hb_000375_200 Hb_000187_020--Hb_059832_010 Hb_000187_020--Hb_000193_170 Hb_000130_400 Hb_000130_400 Hb_000187_020--Hb_000130_400 Hb_000051_130 Hb_000051_130 Hb_000187_020--Hb_000051_130 Hb_002453_040--Hb_052530_010 Hb_000527_030 Hb_000527_030 Hb_002453_040--Hb_000527_030 Hb_002453_040--Hb_000193_170 Hb_006332_030 Hb_006332_030 Hb_002453_040--Hb_006332_030 Hb_003464_040 Hb_003464_040 Hb_002453_040--Hb_003464_040 Hb_003226_040 Hb_003226_040 Hb_052530_010--Hb_003226_040 Hb_000816_080 Hb_000816_080 Hb_052530_010--Hb_000816_080 Hb_052530_010--Hb_000193_170 Hb_052530_010--Hb_003464_040 Hb_059832_010--Hb_000130_400 Hb_000010_320 Hb_000010_320 Hb_059832_010--Hb_000010_320 Hb_059832_010--Hb_000375_200 Hb_158845_010 Hb_158845_010 Hb_059832_010--Hb_158845_010 Hb_000193_170--Hb_000375_200 Hb_000193_170--Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_000193_170--Hb_012368_040 Hb_000193_170--Hb_000130_400 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010 Hb_011859_010 Hb_011859_010 Hb_005918_020--Hb_011859_010 Hb_008226_050 Hb_008226_050 Hb_005918_020--Hb_008226_050 Hb_005918_020--Hb_000193_170 Hb_005918_020--Hb_002453_040 Hb_005918_020--Hb_052530_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0313475 2.17984 0.573322 0.00488924 0.00426446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.011069 0 0 0.00345049 0.223943

CAGE analysis