Hb_158845_010

Information

Type transcription factor
Description TF Family: AP2
Location Contig158845: 3902-7214
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18350g
description hypothetical protein
nr
ID XP_012067459.1
description PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
swissprot
ID Q94AN4
description AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1
trembl
ID U5GNH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s18350g PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor at1g16060

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14099: 5273-6470 , PASA_asmbl_14101: 3934-7298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158845_010 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
2 Hb_015299_040 0.0448481413 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
3 Hb_000010_320 0.0588490669 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
4 Hb_059832_010 0.0790505915 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
5 Hb_074240_030 0.0799834688 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
6 Hb_001357_160 0.0873216866 - - conserved hypothetical protein [Ricinus communis]
7 Hb_054615_010 0.0873866523 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
8 Hb_002243_030 0.0947803157 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
9 Hb_004003_020 0.0953261126 - - unnamed protein product [Coffea canephora]
10 Hb_004109_100 0.1022771784 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
11 Hb_004422_030 0.1023460359 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
12 Hb_023344_100 0.104247066 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
13 Hb_004007_080 0.1046980482 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
14 Hb_000340_550 0.1060571159 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
15 Hb_001439_240 0.1068099673 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
16 Hb_089736_010 0.1096445195 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
17 Hb_003777_260 0.1107256435 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
18 Hb_005288_090 0.110845925 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
19 Hb_001856_190 0.1116639413 - - SP1L, putative [Ricinus communis]
20 Hb_000445_320 0.1118649708 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_158845_010 Hb_158845_010 Hb_015299_040 Hb_015299_040 Hb_158845_010--Hb_015299_040 Hb_000010_320 Hb_000010_320 Hb_158845_010--Hb_000010_320 Hb_059832_010 Hb_059832_010 Hb_158845_010--Hb_059832_010 Hb_074240_030 Hb_074240_030 Hb_158845_010--Hb_074240_030 Hb_001357_160 Hb_001357_160 Hb_158845_010--Hb_001357_160 Hb_054615_010 Hb_054615_010 Hb_158845_010--Hb_054615_010 Hb_002243_030 Hb_002243_030 Hb_015299_040--Hb_002243_030 Hb_015299_040--Hb_000010_320 Hb_015299_040--Hb_074240_030 Hb_015299_040--Hb_001357_160 Hb_015299_040--Hb_054615_010 Hb_000010_320--Hb_074240_030 Hb_000010_320--Hb_059832_010 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060 Hb_001856_190 Hb_001856_190 Hb_000010_320--Hb_001856_190 Hb_000187_020 Hb_000187_020 Hb_059832_010--Hb_000187_020 Hb_000130_400 Hb_000130_400 Hb_059832_010--Hb_000130_400 Hb_000375_200 Hb_000375_200 Hb_059832_010--Hb_000375_200 Hb_000445_320 Hb_000445_320 Hb_059832_010--Hb_000445_320 Hb_074240_030--Hb_001856_190 Hb_074240_030--Hb_054615_010 Hb_074240_030--Hb_001357_160 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020 Hb_001357_160--Hb_002243_030 Hb_001357_160--Hb_001856_190 Hb_001357_160--Hb_000010_320 Hb_089736_010 Hb_089736_010 Hb_054615_010--Hb_089736_010 Hb_004003_020 Hb_004003_020 Hb_054615_010--Hb_004003_020 Hb_088118_010 Hb_088118_010 Hb_054615_010--Hb_088118_010 Hb_000152_650 Hb_000152_650 Hb_054615_010--Hb_000152_650 Hb_002121_030 Hb_002121_030 Hb_054615_010--Hb_002121_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.589613 19.2291 5.49916 0.0129565 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0465741 0.445458 2.95597

CAGE analysis