Hb_003090_020

Information

Type -
Description -
Location Contig3090: 30155-33881
Sequence    

Annotation

kegg
ID tcc:TCM_021789
description DNA double-strand break repair rad50 ATPase, putative isoform 1
nr
ID XP_012087954.1
description PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25076 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32627: 30468-30617 , PASA_asmbl_32628: 31562-31925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_020 0.0 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
2 Hb_001856_190 0.0686888516 - - SP1L, putative [Ricinus communis]
3 Hb_001386_060 0.0748717836 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
4 Hb_074240_030 0.0791809079 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
5 Hb_003592_040 0.0818936213 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
6 Hb_001357_160 0.1047045296 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000362_080 0.1154958927 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
8 Hb_000010_320 0.1215291343 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
9 Hb_015299_040 0.1223376407 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
10 Hb_006586_060 0.1290613125 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
11 Hb_102129_040 0.1303889038 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
12 Hb_000735_190 0.13097669 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
13 Hb_009293_030 0.13228749 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
14 Hb_001221_550 0.1337146072 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
15 Hb_102900_010 0.133916297 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
16 Hb_031862_190 0.1339725477 - - -
17 Hb_000496_100 0.1345182692 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
18 Hb_000751_010 0.1352959551 - - conserved hypothetical protein [Ricinus communis]
19 Hb_054615_010 0.1359995525 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
20 Hb_002243_030 0.1362605248 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003090_020 Hb_003090_020 Hb_001856_190 Hb_001856_190 Hb_003090_020--Hb_001856_190 Hb_001386_060 Hb_001386_060 Hb_003090_020--Hb_001386_060 Hb_074240_030 Hb_074240_030 Hb_003090_020--Hb_074240_030 Hb_003592_040 Hb_003592_040 Hb_003090_020--Hb_003592_040 Hb_001357_160 Hb_001357_160 Hb_003090_020--Hb_001357_160 Hb_000362_080 Hb_000362_080 Hb_003090_020--Hb_000362_080 Hb_001856_190--Hb_001386_060 Hb_001856_190--Hb_074240_030 Hb_001856_190--Hb_003592_040 Hb_000010_320 Hb_000010_320 Hb_001856_190--Hb_000010_320 Hb_001856_190--Hb_001357_160 Hb_001386_060--Hb_003592_040 Hb_001386_060--Hb_074240_030 Hb_001439_160 Hb_001439_160 Hb_001386_060--Hb_001439_160 Hb_001221_550 Hb_001221_550 Hb_001386_060--Hb_001221_550 Hb_074240_030--Hb_000010_320 Hb_015299_040 Hb_015299_040 Hb_074240_030--Hb_015299_040 Hb_054615_010 Hb_054615_010 Hb_074240_030--Hb_054615_010 Hb_074240_030--Hb_001357_160 Hb_003592_040--Hb_001221_550 Hb_002893_220 Hb_002893_220 Hb_003592_040--Hb_002893_220 Hb_006586_060 Hb_006586_060 Hb_003592_040--Hb_006586_060 Hb_002243_030 Hb_002243_030 Hb_001357_160--Hb_002243_030 Hb_001357_160--Hb_015299_040 Hb_158845_010 Hb_158845_010 Hb_001357_160--Hb_158845_010 Hb_001357_160--Hb_000010_320 Hb_009846_010 Hb_009846_010 Hb_000362_080--Hb_009846_010 Hb_009293_030 Hb_009293_030 Hb_000362_080--Hb_009293_030 Hb_001374_050 Hb_001374_050 Hb_000362_080--Hb_001374_050 Hb_002929_030 Hb_002929_030 Hb_000362_080--Hb_002929_030 Hb_000836_620 Hb_000836_620 Hb_000362_080--Hb_000836_620 Hb_009771_010 Hb_009771_010 Hb_000362_080--Hb_009771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.187186 0.0461989 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00879623 0.0463302

CAGE analysis