Hb_002893_220

Information

Type -
Description -
Location Contig2893: 158881-163452
Sequence    

Annotation

kegg
ID mpr:MPER_07904
description hypothetical protein
nr
ID KJB06929.1
description hypothetical protein B456_001G004300 [Gossypium raimondii]
swissprot
ID P45959
description Aldehyde dehydrogenase (Fragment) OS=Geobacillus stearothermophilus PE=3 SV=1
trembl
ID A0A0D2PJE0
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G004300 PE=4 SV=1
Gene Ontology
ID GO:0001758
description aldehyde dehydrogenase family 2 member c4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30285: 148959-163038 , PASA_asmbl_30286: 163218-163365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_220 0.0 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
2 Hb_001221_550 0.0435077324 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
3 Hb_167188_020 0.0597814202 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
4 Hb_002259_120 0.0598029704 - - tonoplast intrinsic protein, putative [Ricinus communis]
5 Hb_000130_340 0.0631170206 - - -
6 Hb_000816_180 0.0712747496 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
7 Hb_003592_040 0.071987155 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
8 Hb_007218_050 0.0750705861 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000089_170 0.076792148 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
10 Hb_006586_060 0.0782845805 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
11 Hb_012675_040 0.0785057905 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
12 Hb_061336_010 0.0785127255 - - conserved hypothetical protein [Ricinus communis]
13 Hb_028486_020 0.0808493801 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006711_030 0.0814134908 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
15 Hb_000510_250 0.0827660826 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
16 Hb_001646_030 0.0832988672 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
17 Hb_002307_140 0.0834978135 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
18 Hb_000739_010 0.0849483637 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
19 Hb_000840_080 0.0861458599 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
20 Hb_180535_010 0.0877151485 - - -

Gene co-expression network

sample Hb_002893_220 Hb_002893_220 Hb_001221_550 Hb_001221_550 Hb_002893_220--Hb_001221_550 Hb_167188_020 Hb_167188_020 Hb_002893_220--Hb_167188_020 Hb_002259_120 Hb_002259_120 Hb_002893_220--Hb_002259_120 Hb_000130_340 Hb_000130_340 Hb_002893_220--Hb_000130_340 Hb_000816_180 Hb_000816_180 Hb_002893_220--Hb_000816_180 Hb_003592_040 Hb_003592_040 Hb_002893_220--Hb_003592_040 Hb_006586_060 Hb_006586_060 Hb_001221_550--Hb_006586_060 Hb_001221_550--Hb_000130_340 Hb_000735_190 Hb_000735_190 Hb_001221_550--Hb_000735_190 Hb_001221_550--Hb_003592_040 Hb_102129_040 Hb_102129_040 Hb_001221_550--Hb_102129_040 Hb_006711_030 Hb_006711_030 Hb_167188_020--Hb_006711_030 Hb_012675_040 Hb_012675_040 Hb_167188_020--Hb_012675_040 Hb_000089_170 Hb_000089_170 Hb_167188_020--Hb_000089_170 Hb_167188_020--Hb_002259_120 Hb_002307_140 Hb_002307_140 Hb_167188_020--Hb_002307_140 Hb_001646_030 Hb_001646_030 Hb_002259_120--Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_002259_120--Hb_000739_010 Hb_002259_120--Hb_000130_340 Hb_002259_120--Hb_012675_040 Hb_001300_190 Hb_001300_190 Hb_002259_120--Hb_001300_190 Hb_007617_030 Hb_007617_030 Hb_000130_340--Hb_007617_030 Hb_006594_030 Hb_006594_030 Hb_000130_340--Hb_006594_030 Hb_000130_340--Hb_001646_030 Hb_000130_340--Hb_000739_010 Hb_031377_010 Hb_031377_010 Hb_000130_340--Hb_031377_010 Hb_180535_010 Hb_180535_010 Hb_000816_180--Hb_180535_010 Hb_061336_010 Hb_061336_010 Hb_000816_180--Hb_061336_010 Hb_007576_090 Hb_007576_090 Hb_000816_180--Hb_007576_090 Hb_007218_050 Hb_007218_050 Hb_000816_180--Hb_007218_050 Hb_000816_180--Hb_002307_140 Hb_072952_010 Hb_072952_010 Hb_000816_180--Hb_072952_010 Hb_001386_060 Hb_001386_060 Hb_003592_040--Hb_001386_060 Hb_003592_040--Hb_006586_060 Hb_003090_020 Hb_003090_020 Hb_003592_040--Hb_003090_020 Hb_001856_190 Hb_001856_190 Hb_003592_040--Hb_001856_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.61558 0.567089 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.532972

CAGE analysis